Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq71540 127 2e-24 seq71761 87.8 1e-12 seq72197 84.2 2e-11 seq71072 82.4 6e-11 >seq71540 Length=49709 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 |||||||||||| || || || || |||||||| || || || || | |||||| || Sbjct 42945 CAGCACCAAATGGAGGGTAGACTCCTTTTGAATATTGTAGTCGGCCAGGGTGCGGCCGTC 42886 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || ||||||||| | || | || ||||| || ||||| || ||||| ||||| Sbjct 42885 CTCAAGCTGCTTGCCAGCAAAAATAAGTCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTC 42826 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 ||||| ||||| || || |||||| ||||| ||| || || || || || || || Sbjct 42825 TTGTATCTTTTGCTTTACGTTTTCTATGGTGTCTGAAGACTCCACCTCGAGGGTAATGGT 42766 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || | || |||||||| || ||||| Sbjct 42765 CTTCCCCGTCAGCGTCTTAACAAAGATTTGCAT 42733 >seq71761 Length=19511 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||| | |||| ||| | || || || ||||| ||||||||||| || || || Sbjct 7951 TCCACCCCTGAGTCGCAACACAAGGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGC 8010 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| || || || || ||||| || | || | | ||||| || || || Sbjct 8011 CAGAGTGCGACCGTCCTCAAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCGGGGGG 8070 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || ||||| || | || || || || | || | ||||| || || Sbjct 8071 GATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGACTCGAC 8130 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || |||||||| || ||||| || || |||||||| Sbjct 8131 CTCGAGAGTAATGGTCTTGCCAGTCAACGTTTTGACGAAGATCTGCAT 8178 >seq72197 Length=52184 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||| | || || || || || || || ||||| || || |||| |||||| Sbjct 20865 CGGAGCACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCG 20806 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || ||||| || | || | | ||||| || || || || ||||| ||| Sbjct 20805 TCCTCGAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 20746 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || || || | || | ||||| || || || || || || Sbjct 20745 TCCTGGATCTTYTGCTTCACGTTCTCGATCGTGTCGCTGGACTCCACCTCGAGGGTAATG 20686 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| || | ||| ||||||||||||||||| || Sbjct 20685 GTCTTGCCGGTCAGGGTCTTAACAAATATCTGCATGTT 20648 >seq71072 Length=54149 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||| | || || || || || ||||||||||| || || || | ||||||| Sbjct 13834 CGAAGCACAAGGTGGAGAGTCGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTGCGACCG 13893 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || ||||| || | || | | ||||| || || ||||| ||||| ||| Sbjct 13894 TCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTG 13953 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || || || | || | ||||| || || || || || ||| Sbjct 13954 TCCTGGATCTTCTGCTTCACGTTCTCAATGGTGTCGCTGGACTCCACCTCGAGGGTAATA 14013 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | || || || || |||||||| Sbjct 14014 GTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCAT 14048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384879240564951