Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq71761 107 4e-18 seq71411 100 6e-16 seq72197 96.9 7e-15 >seq71761 Length=19511 Score = 107 bits (118), Expect = 4e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||| || | ||| ||||||||||| || || || || || || | ||| | | |||| Sbjct 7964 CGCAACACAAGGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGCCAGAGTGCGACCG 8023 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || || || || | || || || || || || |||||||| Sbjct 8024 TCCTCAAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCGGGGGGGATGCCTTCCTTG 8083 Query 82716 TCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| ||| || || || || ||||| || | | || || || | ||| || Sbjct 8084 TCCTGGATCTTCTGC-TTCACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGAGTAAT 8142 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||||||| || || || |||||||| Sbjct 8143 GGTCTTGCCAGTCAACGTTTTGACGAAGATCTGCAT 8178 >seq71411 Length=26387 Score = 100 bits (110), Expect = 6e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82597 GCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGT 82656 |||| || | ||| | ||||| || ||||| | || || |||| |||| | | ||||| Sbjct 17174 GCAGCACGAGGTGGATCGTAGACTCCTTCTGGACGTTGTACTCAGCTAGAGTGCGACCGT 17233 Query 82657 CTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTAT 82716 || ||||| || || | |||| ||||| ||| || ||||| || |||||||||| Sbjct 17234 TCTCCAGTTGCTTGCCCACGAAGACTAGTCGCTGTGATTCAGGAGGGATGCCTTCCTTAT 17293 Query 82717 CTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCG 82776 ||| ||| | || | || |||| || || || | | ||||| || | || |||| Sbjct 17294 CTTTTATCCTCGCCCTAACGCTTTCTATTGTGTCGCTGGCCTCTACCTCAAGGGTAATCG 17353 Query 82777 TCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | ||| || ||||||||| ||| ||||||||| Sbjct 17354 TGCGGCCAGTGTACGTCTTTATAAAAATCTGCATT 17388 >seq72197 Length=52184 Score = 96.9 bits (106), Expect = 7e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || || || || | ||| ||||| || || ||||| || || || |||| Sbjct 20879 TACCACCACGCAGGCGGAGCACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCAG 20820 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||||| || || || || || || || || || | || || || || | Sbjct 20819 CAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCGGGGG 20760 Query 82702 GTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || || ||||| || || ||||| ||||| || || || ||||| || | | || Sbjct 20759 GGATGCCCTCCTTGTCCTGGATCTTYTGCTTC-ACGTTCTCGATCGTGTCGCTGGACTCC 20701 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | || || |||||||| |||| ||||| |||||||||||||| Sbjct 20700 ACCTCGAGGGTAATGGTCTTGCCGGTCAGGGTCTTAACAAATATCTGCAT 20651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980916294167329