Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq68586 111 1e-19 seq71761 109 4e-19 seq68691 105 4e-18 seq72303 96.9 2e-15 seq71838 93.3 3e-14 seq71072 93.3 3e-14 seq72113 91.5 1e-13 >seq68586 Length=2644 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || |||| ||| | || || || ||| || || |||||||| || | Sbjct 454 ACCACCACGCAGGCGTAGCACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGC 395 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| |||| || | ||| || |||||||| || | |||||||| || |||| Sbjct 394 GAGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGCGG 335 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | || || ||||| || ||||| |||| | | ||| ||||||||| || |||| Sbjct 334 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCAATGGTGTCGCTGGACTCCA 276 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || | || || || |||||||||||| Sbjct 275 CCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAGATCTGCATA 226 Score = 100 bits (110), Expect = 2e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| ||||| |||||||| || | ||| ||||| |||| || | || || || || || Sbjct 646 CTCCTTTTGGATGTTGTAGTCAGCGAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAA 587 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 ||| | ||||||||| || | || | || || ||||| || ||||| |||| | | Sbjct 586 AATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGT 528 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | |||||||| || ||||| || | || || || || || || |||||||| | Sbjct 527 TCTCGATCGTGTCGCTGGACTCCACCTCGAGAGTAATGGTCTTGCCAGTCAACGTTTTGA 468 Query 33737 CAAAGATCTGCATA 33750 | |||||||||||| Sbjct 467 CGAAGATCTGCATA 454 >seq71761 Length=19511 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | || ||||| | || ||||| || ||||| |||||||| |||| Sbjct 7952 CCACCCCTGAGTCGCAACACAAGGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGCC 8011 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | || || ||||| ||||| | ||||||||| || | || Sbjct 8012 AGAGTGCGACCGTCCTCAAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCGGGGGGG 8071 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || ||||| |||| | | || | |||||||| || || || Sbjct 8072 ATGCCTTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATCGTGTCGCTGGACTCGAC 8130 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | || || || || || || |||||||| || |||||||||||| Sbjct 8131 CTCGAGAGTAATGGTCTTGCCAGTCAACGTTTTGACGAAGATCTGCATA 8179 >seq68691 Length=2609 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | ||| | || ||||| ||| ||||| |||||||| |||| Sbjct 418 ACCACCACGCAGACGAAGCACGAGGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGC 359 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| |||| |||| || || |||||||| || | |||||||| || |||| Sbjct 358 GAGGGTGCGACCGTCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGCGG 299 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || || || |||| | | || | |||||||| || |||| Sbjct 298 GATGCCCTCCTTGTCCTGGATCTTTTGCTTCA-CGTTCTCGATCGTGTCGCTGGACTCCA 240 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || || || || || | || || || |||||||||||| Sbjct 239 CCTCGAGAGTAATGGTCTTGCCCGTAAGGGTCTTGACGAAGATCTGCATA 190 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| ||||| |||||||| || | ||| ||||| |||| || | ||| || |||||||| Sbjct 610 CTCCTTTTGGATGTTGTAGTCAGCGAGCGTGCGGCCGTCCTCGAGTTGCTTGCCGGCAAA 551 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | |||||||| || | || | || || ||||| || || || |||| | | Sbjct 550 GATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTTTGCTTCA-CGT 492 Query 33678 AGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| ||||||||| || ||||| || | || || || || || || | || || | Sbjct 491 TCTCAATGGTGTCGCTGGACTCCACCTCGAGGGTAATAGTCTTGCCGGTGAGGGTCTTGA 432 Query 33737 CAAAGATCTGCATA 33750 | |||||||||||| Sbjct 431 CGAAGATCTGCATA 418 >seq72303 Length=46806 Score = 96.9 bits (106), Expect = 2e-15 Identities = 166/237 (70%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || || | ||| | || ||||| ||| || || |||||||| |||| Sbjct 30550 ACCACCACGCAGGCGGAGCACGAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGC 30491 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| |||| || | || || ||||| || || | |||||||| || | || Sbjct 30490 CAGAGTGCGACCGTCCTCAAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCGGGGGG 30431 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | || || ||||| || ||||| |||| | | ||| ||||||||| ||||||| Sbjct 30430 AATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCAATGGTGTCGCTGGATTCCA 30372 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTG 33757 | || | ||||| || || || || | || || || ||||||||||| |||| || Sbjct 30371 CCTCGAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAGATCTGCAT-GTTGTTG 30316 >seq71838 Length=148749 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | || | ||| | || || ||| ||| || || |||||||| || | Sbjct 72814 CACCACCACGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCG 72873 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 ||| || | | || || | || || ||||| || |||| |||||||||||| | | Sbjct 72874 CGAGGGTCCTGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCAGGAG 72933 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || || ||||| ||| ||||| || ||||| || | ||||||| || ||| Sbjct 72934 GGATGCCCTCCTTGTCCTGAATCTTCTGCTT-AACATTTTCGATGGTGTCGGACGACTCC 72992 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| || || || || | || || || ||||||||||| Sbjct 72993 ACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTGACGAAGATCTGCAT 73042 >seq71072 Length=54149 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | ||| | || ||||| ||| ||||| |||||||| |||| | Sbjct 13822 CCACCGCGCAGGCGAAGCACAAGGTGGAGAGTCGACTCCTTTTGAATGTTGTAGTCGGCG 13881 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | || || ||||| || || | |||||||| || | || Sbjct 13882 AGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGA 13941 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||||| |||| | | ||| ||||||||| || ||||| Sbjct 13942 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCAATGGTGTCGCTGGACTCCAC 14000 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || || || || || | || || || ||||||||||| Sbjct 14001 CTCGAGGGTAATAGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCAT 14048 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | ||| | || || || ||| || || |||||||| |||| | Sbjct 14050 CCACCGCGCAGACGAAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 14109 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | || || || || || || | |||||||| || |||| Sbjct 14110 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 14169 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | || || ||||| || || || || | | | ||| ||||||||| || ||||| Sbjct 14170 ATGCCCTCCTTGTCCTGGATCTTTTGCTTTA-CGTTCTCAATGGTGTCGCTGGACTCCAC 14228 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || || ||||||||||| Sbjct 14229 CTCAAGGGTGATGGTCTTGCCCGTAAGAGTCTTGACGAAGATCTGCAT 14276 >seq72113 Length=77669 Score = 91.5 bits (100), Expect = 1e-13 Identities = 170/245 (69%), Gaps = 5/245 (2%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | || | ||| | || ||||| ||| || || |||||||| |||| Sbjct 39566 ACCACCACGNAGGCGGAGCACGAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGC 39507 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| |||| || | || || ||||| || || | |||||||| || | || Sbjct 39506 CAGAGTGCGACCGTCCTCAAGCTGCTTACCGGCGAATATAAGGCGCTGCTGGTCGGGGGG 39447 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || ||||| |||| | | || | |||||||| ||||||| Sbjct 39446 AATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATCGTGTCGCTGGATTCCA 39388 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA--GTTGGTGT 33758 | || | || || || || || || || || || || |||||||||||| | |||||| Sbjct 39387 CCTCGAGAGTAATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATACTGCTGGTGT 39328 Query 33759 -GTTT 33762 |||| Sbjct 39327 AGTTT 39323 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| ||||| |||||||| || | ||| ||||| |||| || | || || ||||| || Sbjct 39986 CTCCTTTTGGATGTTGTAGTCAGCGAGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAA 39927 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | |||||||| || | || | || || ||||| || ||||| |||| | | Sbjct 39926 GATGAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGT 39868 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | |||||||| || ||||| || | || || || || || |||| || || | Sbjct 39867 TCTCGATCGTGTCGCTGGACTCCACCTCGAGAGTAATGGTCTTGCCCGTTAGAGTCTTGA 39808 Query 33737 CAAAGATCTGCATA 33750 | |||||||||||| Sbjct 39807 CGAAGATCTGCATA 39794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328413915741120