Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq71838 91.5 1e-13 seq71072 91.5 1e-13 seq71761 87.8 2e-12 seq72113 84.2 2e-11 seq68691 84.2 2e-11 >seq71838 Length=148749 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| | ||| | ||| |||||||| || |||| Sbjct 72849 GACTCCTTCTGGATGTTGTAGTCCGCGAGGGTCCTGCCATCCTCGAGCTGCTTGCCGGCG 72908 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| ||||| ||||| ||||| || || || ||| || || || | Sbjct 72909 AAGATCAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTAACA 72968 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | || |||| || |||||| || | || | || || || || || || || Sbjct 72969 TTTTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTG 73028 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 73029 ACGAAGATCTGCATG 73043 >seq71072 Length=54149 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| |||||||||||||||||| | ||| || || |||||||| || |||| Sbjct 13855 GACTCCTTTTGAATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCG 13914 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || ||||| || || || || || || |||| Sbjct 13915 AAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCACG 13974 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | | |||||| |||| || | || || || || ||||| || Sbjct 13975 TTCTCAATGGTGTCGCTGGACTCCACCTCGAGGGTAATAGTCTTGCCGGTAAGAGTCTTG 14034 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 14035 ACGAAGATCTGCATG 14049 >seq71761 Length=19511 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | || | ||| | | ||||| || || |||||||||||| || || Sbjct 8185 ACGCAGGCGGAGCACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGAGT 8244 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| ||||||| |||| || ||||| || || || || ||||| Sbjct 8245 GCGACCGTCCTCAAGCTGCTTACCGGCGAAGATAAGGCGCTGCTGGTCGGGGGGAATGCC 8304 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || || || || |||| | || | || ||| | | ||| || |||| Sbjct 8305 TTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAG 8364 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || ||||| || || || | ||||||||||||| Sbjct 8365 AGTAATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCATG 8407 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || |||||||||||||||||| || || || || || ||||| || |||| Sbjct 7985 GATTCCTTTTGAATGTTGTAGTCGGCCAGAGTGCGACCGTCCTCAAGCTGCTTGCCGGCG 8044 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || |||||||| || || || || |||||||| || || || || || |||| Sbjct 8045 AAAATAAGACGCTGCTGGTCGGGGGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTCACG 8104 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | | ||| || |||| || | || || ||||||| ||||| Sbjct 8105 TTCTCGATCGTGTCGCTGGACTCGACCTCGAGAGTAATGGTCTTGCCAGTCAACGTTTTG 8164 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 8165 ACGAAGATCTGCAT 8178 >seq72113 Length=77669 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||| ||||||||||| | ||| || || |||||||| || |||| Sbjct 39988 GACTCCTTTTGGATGTTGTAGTCAGCGAGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCG 39929 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || ||||| ||||| || || || || || || |||| Sbjct 39928 AAGATGAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCACG 39869 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | | |||||| |||| || | || || || || ||||| || Sbjct 39868 TTCTCGATCGTGTCGCTGGACTCCACCTCGAGAGTAATGGTCTTGCCCGTTAGAGTCTTG 39809 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 39808 ACGAAGATCTGCAT 39795 >seq68691 Length=2609 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||| |||||||||||| | ||| || || || ||||| || |||| | Sbjct 384 GACTCCTTTTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCCAGCTGCTTGCCGGCA 325 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || ||||| || || || || ||||| |||| Sbjct 324 AAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACG 265 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | | |||||| |||| || | || || || || || || || Sbjct 264 TTCTCGATCGTGTCGCTGGACTCCACCTCGAGAGTAATGGTCTTGCCCGTAAGGGTCTTG 205 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 204 ACGAAGATCTGCAT 191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476179801329960