Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq71540 125 6e-24 >seq71540 Length=49709 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | ||||| || |||||||||||||||||| || | |||| |||| || Sbjct 42941 ACCAAATGGAGGGTAGACTCCTTTTGAATATTGTAGTCGGCCAGGGTGCGGCCGTCCTCA 42882 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || |||| || ||||| || || ||||| | ||||| || || Sbjct 42881 AGCTGCTTGCCAGCAAAAATAAGTCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGT 42822 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| | || | | |||||| ||||||| | || || || || || || | || Sbjct 42821 ATCTTTTGCTTTACGTTTTCTATGGTGTCTGAAGACTCCACCTCGAGGGTAATGGTCTTC 42762 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||||||| || || |||||||||||||| Sbjct 42761 CCCGTCAGCGTCTTAACAAAGATTTGCAT 42733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424559391541032