Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq71032 325 5e-84 >seq71032 Length=21228 Score = 325 bits (360), Expect = 5e-84 Identities = 1170/1808 (65%), Gaps = 40/1808 (2%) Strand=Plus/Minus Query 110362 TCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGA 110421 ||| || |||||||| || ||||| || || | ||||| ||||| | ||||| || | Sbjct 16103 TCGCAGGTAGTACATGCCAGTCTTCAGACCCTTATTCCAGGCGTAGAAGTGCATGGACGT 16044 Query 110422 GAGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATG-A 110480 ||||||| | | || ||||| | | ||| | | ||||||||||||||| | Sbjct 16043 AAGCTTGGCGAAAGAAGGCTCGCCCATGTAAATGTTGAGAGATTGACTTTGGTCAATATA 15984 Query 110481 AGCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGC 110540 |||| | | | || ||||| || || || | | ||| ||||| ||||| Sbjct 15983 AGCGGAGCGATCG-GCAGCCATGTCGATTACTACACGCTGAGGAATCTCCCACACTGTCT 15925 Query 110541 GATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCC---G 110597 || || ||||||| ||| || || || || ||| ||| | ||||| | Sbjct 15924 TGTAAAGCTTCTTGAGATCGTCAGGTATCTCCTCGATGCGCTGCACCGAACCGTTGTGGG 15865 Query 110598 CCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGA 110657 || || | || | ||| | | |||||| || || || || |||||| || Sbjct 15864 CCACCAGCTTG---TTCTTGAGGGCGGGGGACCACAGGCCGCGCTCCTGAAGGTCACGGA 15808 Query 110658 CGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTG 110717 ||||||| |||||| | | ||| ||||| || ||| | | | ||||||||| | Sbjct 15807 GCAGGTGCTCGTTGACGACGGTAAAGTCACCAGCAAGGATGCGGCGAGTGTAGATGTTGG 15748 Query 110718 TTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCA 110777 ||||| || || ||||| || ||||| || | ||| || | ||| ||||| || |||| Sbjct 15747 AGGTGTAGGGCTCGAAGCACTCGTTATTGCCGAGGATCTGAGAGGTCGAGGCAGTGGGCA 15688 Query 110778 TTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACAT 110837 | || || | | || ||| | ||||| | ||| | | | | Sbjct 15687 TAGGAGCGACGAGCAGCGAGTTCCTGAGACCGTGACGAGCAATGTCGGCACGCAAAGTGT 15628 Query 110838 CCCAGTCGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGG 110897 |||| || || | | || | | | ||| | ||| ||| |||| || | || Sbjct 15627 CCCAATCCCAGCGGTCCGAGGGAACGACGTTCCAAAGGTCGGGCTGGAGCAGGCCCTTGG 15568 Query 110898 ACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCG 110957 | |||||||||||||| | || |||| ||||| | | |||| || ||| | Sbjct 15567 AAGCGGGAGAACCCTCGTAAGTCGAGTAGGCGCCTTGTTCCTTCGCCATCTCGCAGGAGG 15508 Query 110958 CCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCA-TTCATCTCCTTGGCTTCA 111016 | |||| || ||||| ||||| || ||||| | || |||| ||| ||| ||| Sbjct 15507 CGGTGAGGGCAGCATGATAGATGGTCTCGAAGATG-GCGCGGTTCAGCTCGCGGGCCTCA 15449 Query 111017 TCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAA 111076 || | | | |||| || || ||||| || ||||| || || || || | Sbjct 15448 GGGCTCTCCCAAGGGAAGCGCATCAGCATGAATACGTCGGCGAGTCCCTGCACGCCTATG 15389 Query 111077 CCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTG 111136 || || || ||||| |||||||| || || || || | ||||| ||| | || || Sbjct 15388 CCGATCGGCCTGTGACGCATATTCGAATTGCGGGCCTCCGGCACGGGGTAATAGTTGATG 15329 Query 111137 TCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAA 111196 |||||||| ||| ||||| ||||| || | ||| | || || || || | | Sbjct 15328 TCAATGACCTTGTTAAGATTCTTGGTTACGACCTTAACCACGTCGTGCAGCTTCTTGTGG 15269 Query 111197 TCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAA 111256 ||||| ||||||| | | ||| | || |||||||| | || ||||| ||||| Sbjct 15268 TCAAATTCGCGAGTCGC---AGTGATGAATTTGGGAAGGGCAAGAGAGGCCAAGTTGCAC 15212 Query 111257 ACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTA 111316 |||||| || || ||| ||| | | ||||| || |||||||| || Sbjct 15211 ACAGCCACTTCGTCGGGGGAAGTGAACTGGATCACCTCTGTGCACAAGTTGGACGACTGG 15152 Query 111317 ATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAG 111376 || || || | | || |||||| ||| |||||| | |||||||||||||||||| Sbjct 15151 ATGGTGCCGAGGTGCTGCTGGTTAGACTTGCGGTTGCAGGAGTCCTTGTAGAGCATGTAG 15092 Query 111377 GGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTAC- 111435 || || |||||||| |||| || | ||| |||| ||| | || || || Sbjct 15091 GGAGTGCCCGTCTCAATCTGAGACTCGAGGATAGAGAACCAGAGTTCCTGAGCCTTCACG 15032 Query 111436 -AATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAG-GGCTTCAAACTCCTCA 111493 | |||| ||| || |||||| |||||| ||| || |||| |||||| || Sbjct 15031 ACACGGCG--GGCGCGACCCTCCTGCTCGTAGCGCTCGTACAGCTGCTT-AAACTCGTCT 14975 Query 111494 CCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCT 111553 ||| | ||| | ||||| || |||| || || ||||| || ||||| | ||| || Sbjct 14974 CCCCAAGTATCGAACAGACCCGGGGCCTCGTTGGGGCAGAAGAGCGACCAGTCACCGCCG 14915 Query 111554 TCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CA 111612 || || |||| |||||||||||| |||| ||||| | |||||||| | | || Sbjct 14914 TCACGCACACGCTCCATGAAAAGGTCGGGAACCCACAAACCGTAGAAGAGATCGCGAGCA 14855 Query 111613 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGT 111671 | | | ||| || | ||| || || || | | ||| ||||| || | |||||| || | Sbjct 14854 CGGTG-CTCCTCCTTACCGTGATT-CTTCTTGAGCTCGAGGAATTCGAAGATATCGGCAT 14797 Query 111672 GCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACAT 111728 |||| |||||||| |||| || | | |||||| || || ||| |||| | || | Sbjct 14796 GCCAGGGCTCAAGGTAGATGGCAAAGGCTCCCTTGCGCTTACCGCCACCTTGGTCAACGT 14737 Query 111729 AGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTG 111788 |||| || ||| |||| ||||||||||||| ||||| | ||||| || || || | Sbjct 14736 AGCGAGCAGTGTCGTTGTATACGCGAAGCATCGGAATGAGACCATTCGAGGTGCCGTTGG 14677 Query 111789 TCCCCCGAATACGAGATTTATTGGCTCTCACATCATG-GATGTGCATC----CCAATACC 111843 | || || || ||| || |||| ||| | ||| || | || ||||| Sbjct 14676 TGCCGCGGATGTAAGAGTTGGAAGCTC-----GGATGCGGTGTACAGCAAGGCCGATACC 14622 Query 111844 CCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGA 111903 |||||| |||| ||||| | ||||||| | | ||||| | ||||| || | ||||| Sbjct 14621 CCCAGCGGACTTAGAGATGAGGGCACACTGCTTGAGAGTGTCGTAGATCCCTTCAATTGA 14562 Query 111904 GTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATT 111963 |||||| || ||| | |||||||| || | |||||| | || || || ||||| Sbjct 14561 GTCCTCTTTCATGGTAAGGAGGAAGCACGAAGAAAGCTGCGGGCGAGGAGTGCCGGCATT 14502 Query 111964 GAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAA 112023 ||||||||| || || ||||| |||| | ||||| | |||||| || || | Sbjct 14501 GAAGAGGGTAGGGGTAGCGTGGGTGAAGAGTTGCTGGGAGAGAAGGTCGTAGGTTTCGAT 14442 Query 112024 GACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 |||| ||| | ||| ||| | ||| | ||||| ||||| | ||| | |||||| Sbjct 14441 AACAGCGGGAATATTGTCCTTGTGAAGGCCAACAGCGACGCGCATCAGCATATGCTGTGG 14382 Query 112084 GGTTTCCATGAGGATGCCATCGAGCCGTTG--AAGATAGCTCTTCTCAAGGGTTTTGAGA 112141 | || | || ||||||||| | ||| ||||||| ||| || || || | | Sbjct 14381 TCTCTCGACGATCTTGCCATCGATC--TTGAAAAGATAGGAACGCTCGAGAGTCTTAAAA 14324 Query 112142 CCAAAGTA 112149 || ||||| Sbjct 14323 CCGAAGTA 14316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627463544685600