Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq71032 264 1e-65 seq71924 123 3e-23 >seq71032 Length=21228 Score = 264 bits (292), Expect = 1e-65 Identities = 919/1423 (65%), Gaps = 16/1423 (1%) Strand=Plus/Minus Query 118134 AGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTC 118193 || |||| ||||| || ||| ||||| || ||| |||| | ||||| |||| Sbjct 15805 AGGTGCTCGTTGACGACGGTAAAGTCACCAGCAAGGATGCGGCGAGTGTAGATGTTGGAG 15746 Query 118194 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 118253 ||||| ||||| |||||||| || || || | ||| || | || ||||| |||||||| Sbjct 15745 GTGTAGGGCTCGAAGCACTCGTTATTGCCGAGGATCTGAGAGGTCGAGGCAGTGGGCATA 15686 Query 118254 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCC 118313 || || | ||| || ||| | |||||| | |||| | | || |||| Sbjct 15685 GGAGCGACGAGCAGCGAGTTCCTGAGACCGTGACGAGCAATGTCGGCACGCAAAGTGTCC 15626 Query 118314 CAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAC 118373 || || || | | | | | | ||| | || |||||| | || | ||| Sbjct 15625 CAATCCCAGCGGTCCGAGGGAACGACGTTCCAAAGGTCGGGCTGGAGCAGGCCCTTGGAA 15566 Query 118374 GCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCC 118433 || || || ||||| | ||| || | ||| | ||| ||||| ||| || || Sbjct 15565 GCGGGAGAACCCTCGTAAGTCGAGTAGGCGCCTTGTTCCTTCGCCATCTCGCAGGAGGCG 15506 Query 118434 TCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCA-TTCATTGCCTTGGCCTCGTC 118492 |||||| || ||||| || || || || ||| | || |||| | |||||| Sbjct 15505 GTGAGGGCAGCATGATAGATGGTCTCGAAGATG-GCGCGGTTCAGCTCGCGGGCCTCAGG 15447 Query 118493 GGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCC 118552 | || | | || || || || ||||| || ||||| || || || || | ||| Sbjct 15446 GCTCTCCCAAGGGAAGCGCATCAGCATGAATACGTCGGCGAGTCCCTGCACGCCTATGCC 15387 Query 118553 AATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATC 118612 || || | || | |||||| || || || || | |||||| ||| | || | || Sbjct 15386 GATCGGCCTGTGACGCATATTCGAATTGCGGGCCTCCGGCACGGGGTAATAGTTGATGTC 15327 Query 118613 GATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATC 118672 || ||| | || ||||| ||||| || ||||| | || || ||||| | || || Sbjct 15326 AATGACCTTGTTAAGATTCTTGGTTACGACCTTAACCACGTCGTGCAGCTTCTTGTGGTC 15267 Query 118673 AAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACAC 118732 ||| ||||||| | | ||| | || |||||||| | || |||| || ||||| Sbjct 15266 AAATTCGCGAGTCGC---AGTGATGAATTTGGGAAGGGCAAGAGAGGCCAAGTTGCACAC 15210 Query 118733 AGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAAT 118792 || || || |||| ||| || | || ||||||||||| || || || Sbjct 15209 AGCCACTTCGTCGGGGGAAGTGAACTGGATCACCTCTGTGCACAAGTTGGACGACTGGAT 15150 Query 118793 GGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGG 118852 |||||| | || || || || ||||| ||| || | |||||||| |||||||| || Sbjct 15149 GGTGCCGAGGTGCTGCTGGTTAGACTTGCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGG 15090 Query 118853 CGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCAC--A 118910 || |||||||| | || |||| ||| |||| ||||| || ||| ||| Sbjct 15089 AGTGCCCGTCTCAATCTGAGACTCGAGGATAGAGAACCAGAGTTCCTGAGCCTTCACGAC 15030 Query 118911 GTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAG-GGCTTCAAACTCTTCACC 118969 |||| ||| || ||||| | |||||| ||| || |||| |||||| || || Sbjct 15029 ACGGCG--GGCGCGACCCTCCTGCTCGTAGCGCTCGTACAGCTGCTT-AAACTCGTCTCC 14973 Query 118970 CACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTC 119029 | | || | || || || |||| | ||||||||||| ||||| | ||| || || Sbjct 14972 CCAAGTATCGAACAGACCCGGGGCCTCGTTGGGGCAGAAGAGCGACCAGTCACCGCCGTC 14913 Query 119030 CTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGA-CAGC 119088 || |||| |||||| ||||| || | ||| | | |||||||||| ||| || Sbjct 14912 ACGCACACGCTCCATGAAAAGGTCGGGAACCCACAAACCGTAGAAGAGATCGCGAGCACG 14853 Query 119089 GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCC 119148 | || || || | || ||||| | ||| | || || | |||||| || |||| Sbjct 14852 GTGC-TCCTCCTTACCGTGATTCTTCTTGAGCTCGAGGAATTCGAAGATATCGGCATGCC 14794 Query 119149 ACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACC 119205 | || || ||||| | || | | ||||| || || ||| | |||| || || | Sbjct 14793 AGGGCTCAAGGTAGATGGCAAAGGCTCCCTTGCGCTTACCGCCACCTTGGTCAACGTAGC 14734 Query 119206 TCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCC 119265 |||||| |||| |||| |||||||| ||||||| ||||| || ||| || || | Sbjct 14733 GAGCAGTGTCGTTGTATACGCGAAGCATCGGAATGAGACCATTCGAGGTGCCGTTGGTGC 14674 Query 119266 CCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCC 119325 | || || ||| || |||| || ||| | | || |||||||| || Sbjct 14673 CGCGGATGTAAGAGTTGGAAGCTCGGATGCGGTGTACAGCAAGGCCGATACCCCCAGCGG 14614 Query 119326 ACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCT 119385 |||| ||||| | || |||| | ||||| || |||||||||| || || ||||| | | Sbjct 14613 ACTTAGAGATGAGGGCACACTGCTTGAGAGTGTCGTAGATCCCTTCAATTGAGTCCTCTT 14554 Query 119386 TATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAG 119445 | | | | ||||||||| || | || || | || || || || |||||||| | Sbjct 14553 TCATGGTAAGGAGGAAGCACGAAGAAAGCTGCGGGCGAGGAGTGCCGGCATTGAAGAGGG 14494 Query 119446 TTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGG 119505 | || || |||||| |||| | ||||| | ||||||||| || | || |||| Sbjct 14493 TAGGGGTAGCGTGGGTGAAGAGTTGCTGGGAGAGAAGGTCGTAGGTTTCGATAACAGCGG 14434 Query 119506 GAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACAT 119548 |||| | ||| ||||| || | | ||| ||||| | ||| Sbjct 14433 GAATATTGTCCTTGTGAAGGCCAACAGCGACGCGCATCAGCAT 14391 >seq71924 Length=31871 Score = 123 bits (136), Expect = 3e-23 Identities = 238/343 (69%), Gaps = 10/343 (3%) Strand=Plus/Plus Query 129838 GAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGAT 129897 ||||||||| || | |||| | || ||||||| |||| ||||| |||||| ||||| Sbjct 8487 GAGGAGACGGTCGGCGACGAATTCGATGTACTGGCACATGAGCTCGGCGTTCATGCCGAT 8546 Query 129898 GAG-GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCA 129956 ||| | || ||||| | || || |||| ||||||| || || ||||| || | | Sbjct 8547 GAGAGCCACG-GGGAGAGACTCGGTGACGAACTCCTTCTCTATCTCGACAGCCTCGAGAA 8605 Query 129957 CGATGGCGTGAATGGTCTCCGTGCCAGG-TCTATTGC---GCAAAGTCTTGAAGAGTTCC 130012 ||| | | | ||| | || ||| | | ||| ||| | | || ||| | Sbjct 8606 TGATCGTCTTAGGAACCTCGG-GCGAGGGTTTGTTGACGAGCATGCTATAGAGGAGA--C 8662 Query 130013 ACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGA 130072 | | |||| || ||| ||||||||||||||| |||||| || || || ||| | || Sbjct 8663 AAG-CAAAGTCGCAGTGAAGACCCTCGTCACGGCTGATGAGCTCGTTGGAAAAGGAGAGT 8721 Query 130073 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAG 130132 || |||||||| || |||||||||| ||| || || | || || ||| |||||||| Sbjct 8722 CCGGGCATGAGGCCTCGCTTCTTCAGCCAAAAGATGGAGCAGAAGCTGCCCGAGAAGAAA 8781 Query 130133 ATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG 130175 || ||||| || || || ||| |||||||||||| |||| Sbjct 8782 ATGCCCTCTACGGCAGCAAAACCAATGAGACGCTCAGCGAAGG 8824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617875431109160