Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq71032 224 1e-53 seq71924 129 7e-25 >seq71032 Length=21228 Score = 224 bits (248), Expect = 1e-53 Identities = 690/1055 (65%), Gaps = 24/1055 (2%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| | ||| | |||||||| || | || |||| ||| | ||| |||| Sbjct 14382 CCACAGCATATGCTGATGCGCGTCGCTGTTGGCCTTCACAAGGACAATATTCCCGCTGTT 14441 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | || || |||||| | ||||| | |||| ||||| || || ||||||||| Sbjct 14442 ATCGAAACCTACGACCTTCTCTCCCAGCAACTCTTCACCCACGCTACCCCTACCCTCTTC 14501 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 ||||| || || || | || || | || |||||||| | ||| || |||||| Sbjct 14502 AATGCCGGCACTCCTCGCCCGCAGCTTTCTTCGTGCTTCCTCCTTACCATGAAAGAGGAC 14561 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 ||||| | || ||||| | ||||| | | ||||||| | ||||| |||| |||||| Sbjct 14562 TCAATTGAAGGGATCTACGACACTCTCAAGCAGTGTGCCCTCATCTCTAAGTCCGCTGGG 14621 Query 104462 GGTATTGG----GATGCACATC-CATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGA 104516 ||||| || | || ||| | ||| |||| || ||| || || || | Sbjct 14622 GGTATCGGCCTTGCTGTACACCGCATCC-----GAGCTTCCAACTCTTACATCCGCGGCA 14676 Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576 | || || || ||||| | ||||| ||||||||||||| |||| ||| || |||| Sbjct 14677 CCAACGGCACCTCGAATGGTCTCATTCCGATGCTTCGCGTATACAACGACACTGCTCGCT 14736 Query 104577 ATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 | || | |||| ||| || || |||||| | | || |||| |||||||| |||| Sbjct 14737 ACGTTGACCAAGGTGGCGGTAAGCGCAAGGGAGCCTTTGCCATCTACCTTGAGCCCTGGC 14796 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 | || |||||| | || ||||| ||| | || || ||| | |||||| | | || Sbjct 14797 ATGCCGATATCTTCGAATTCCTCGAGCTCAAGAAGAATCACGGTAAGGAGGAG-CACCGT 14855 Query 104694 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 || ||||||||||||| || | | ||| |||| || || |||||| || | || || Sbjct 14856 GCTCGCGATCTCTTCTACGGTTTGTGGGTTCCCGACCTTTTCATGGAGCGTGTGCGTGAC 14915 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGT 104812 | || | ||||| ||||| || || || |||| || ||||| | |||| | ||| Sbjct 14916 GGCGGTGACTGGTCGCTCTTCTGCCCCAACGAGGCCCCGGGTCTGTTCGATACTTGGGGA 14975 Query 104813 GAGGAGTTTGAAGC-CCTTTACACAAAGTACGAGGAAGAAGGTCG-GGCGACTGCGACGG 104870 || |||||| |||| || ||| |||||| | || ||||| | | | | | | | Sbjct 14976 GACGAGTTT-AAGCAGCTGTACGAGCGCTACGAGCAGGAGGGTCGCGCCCGCCGTGTC-G 15033 Query 104871 TGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 104930 || ||| || | ||| |||| ||| ||||||| | ||||| || || || | Sbjct 15034 TGAAGGCTCAGGAACTCTGGTTCTCTATCCTCGAGTCTCAGATTGAGACGGGCACTCCCT 15093 Query 104931 ACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 104990 ||||||| ||||| ||| |||| |||| ||| ||| || || | | || ||| Sbjct 15094 ACATGCTCTACAAGGACTCCTGCAACCGCAAGTCTAACCAGCAGCACCTCGGCACCATCC 15153 Query 104991 AGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 105050 || ||||| | || ||||| | | | || || | || || |||||||| Sbjct 15154 AGTCGTCCAACTTGTGCACAGAGGTGATCCAGTTCACTTCCCCCGACGAAGTGGCTGTGT 15213 Query 105051 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATC-CAGAGACAAAGACATTTGAT 105109 | ||| | || || | || || ||||| | ||| | | ||| |||||| Sbjct 15214 GCAACTTGGCCTCTCTTGCCCTTCCCAA----ATTCATCACTGCGACTCGCGAATTTGAC 15269 Query 105110 TATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGAT 105169 | | || || ||||| || || || ||||| || || |||| || ||||| Sbjct 15270 CACAAGAAGCTGCACGACGTGGTTAAGGTCGTAACCAAGAATCTTAACAAGGTCATTGAC 15329 Query 105170 AGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 105229 | || | ||||||||| | || || || || |||||| | ||| | || || || Sbjct 15330 ATCAACTATTACCCCGTGCCGGAGGCCCGCAATTCGAATATGCGTCACAGGCCGATCGGC 15389 Query 105230 CTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCT 105264 | || || ||||| ||||| || |||||||| || Sbjct 15390 ATAGGCGTGCAGGGACTCGCCGACGTATTCATGCT 15424 >seq71924 Length=31871 Score = 129 bits (142), Expect = 7e-25 Identities = 183/257 (71%), Gaps = 3/257 (1%) Strand=Plus/Minus Query 94702 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGAT 94761 |||||| | | ||||| |||||| |||| || || | | ||||||| || || Sbjct 8921 GAGAAGGATCGCCTCTTCCGCGCCATCGAAACTGTGCCTTCAGTCAAAAAGAAGGCCGAG 8862 Query 94762 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGTT---CCTTTGCTGAGCGACTCTTCGCA 94818 |||||||| |||||| | | | || | |||| |||||||| ||| | | Sbjct 8861 TGGGCTATCAAGTGGATCGGCAAGGAGGGCCAGGAGACCTTCGCTGAGCGTCTCATTGGT 8802 Query 94819 TTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAG 94878 ||||| || ||||| || |||||||| || ||||||| | || | |||||| ||| Sbjct 8801 TTTGCTGCCGTAGAGGGCATTTTCTTCTCGGGCAGCTTCTGCTCCATCTTTTGGCTGAAG 8742 Query 94879 AAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGA 94938 |||||||| |||||||| || |||| ||| ||||||||||| ||| ||||||||||| Sbjct 8741 AAGCGAGGCCTCATGCCCGGACTCTCCTTTTCCAACGAGCTCATCAGCCGTGACGAGGGT 8682 Query 94939 CTCCACCAAGAGTTTGC 94955 || ||| || ||||| Sbjct 8681 CTTCACTGCGACTTTGC 8665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582732868777640