Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq71540 118 3e-21 seq71838 109 2e-18 seq71761 109 2e-18 seq68586 109 2e-18 seq72113 100 9e-16 seq68691 100 9e-16 seq72303 96.9 1e-14 seq72197 96.9 1e-14 seq71007 91.5 4e-13 seq71226 89.7 2e-12 seq44037 84.2 7e-11 >seq71540 Length=49709 Score = 118 bits (130), Expect = 3e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||| ||||| | ||| || || | ||| || |||||||| ||||||||||| || || | Sbjct 42960 ACCCCCACGAAGTCTCAGCACCAAATGGAGGGTAGACTCCTTTTGAATATTGTAGTCGGC 42901 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || || || ||||| || || |||||||| || || || ||||| ||||| || Sbjct 42900 CAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAAATAAGTCGCTGCTGGTCAGGCGG 42841 Query 140630 AATTCCTTCTTTATCCTGAAT-TTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAA 140688 || || || || || || || ||| || ||||| || || || | || || | || | Sbjct 42840 GATGCCCTCCTTGTCTTGTATCTTTTGC-TTTACGTTTTCTATGGTGTCTGAAGACTCCA 42782 Query 140689 CTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || |||| ||||| || || || || || ||||| || ||||| Sbjct 42781 CCTCGAGGGTAATGGTCTTCCCCGTCAGCGTCTTAACAAAGATTTGCAT 42733 >seq71838 Length=148749 Score = 109 bits (120), Expect = 2e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || ||||| || || || ||||| || || || || || || | Sbjct 72815 ACCACCACGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGC 72874 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || | ||||| || || || || || || ||||| ||||| |||||||||||||| Sbjct 72875 GAGGGTCCTGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCAGGAGG 72934 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || || |||||||| || || ||||| || || | || || | || || Sbjct 72935 GATGCCCTCCTTGTCCTGAATCTTCTGCTTAACATTTTCGATGGTGTCGGACGACTCCAC 72994 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || || || || || || || |||||||| Sbjct 72995 CTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTGACGAAGATCTGCAT 73042 >seq71761 Length=19511 Score = 109 bits (120), Expect = 2e-18 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || ||||| ||||| ||||| || || || || || || Sbjct 8176 CATACCACCACGCAGGCGGAGCACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTC 8235 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || ||||| || || || || ||||| || || ||||| || || Sbjct 8236 GGCCAGAGTGCGACCGTCCTCAAGCTGCTTACCGGCGAAGATAAGGCGCTGCTGGTCGGG 8295 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TT 140685 ||||| ||||| || ||||| || || || || || || |||| || | ||| | Sbjct 8296 GGGAATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTC-GCTGGACT 8354 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || |||| ||||| || || || || || || ||||||||||| Sbjct 8355 CGACCTCGAGAGTAATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 8406 >seq68586 Length=2644 Score = 109 bits (120), Expect = 2e-18 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||| ||||| || || |||||||| || || || || || || Sbjct 457 CATACCACCACGCAGGCGTAGCACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTC 398 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || ||||| || || |||||||| || || ||||| || || Sbjct 397 AGCGAGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGG 338 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TT 140685 || || || || || ||||| || || || || || ||||| | || | ||| | Sbjct 337 CGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCAATGGTGTC-GCTGGACT 279 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || ||||| || | ||||| || || || || || || || |||||||| Sbjct 278 CCACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAGATCTGCAT 227 >seq72113 Length=77669 Score = 100 bits (110), Expect = 9e-16 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||||| | || || || || || |||||||| || || || || || || Sbjct 39797 CATACCACCACGTAGGCGGAGCACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTC 39738 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || || || ||||| || || ||||| || || Sbjct 39737 AGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGG 39678 Query 140627 AGGAATTCCTTCTTTATCCTGAAT-TTTAGCTTTTACATTATCAATCGAATCAGATGG-T 140684 || || || || || ||||| || ||| || || || || || |||| || | ||| Sbjct 39677 GGGGATGCCCTCCTTGTCCTGGATCTTTTGC-TTCACGTTCTCGATCGTGTC-GCTGGAC 39620 Query 140685 TCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || |||| ||||| || || || || || || || |||||||| Sbjct 39619 TCCACCTCGAGAGTAATGGTCTTGCCCGTAAGGGTCTTGACGAAGATCTGCAT 39567 Score = 93.3 bits (102), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || ||||| ||||| || || || || || || Sbjct 39569 CATACCACCACGNAGGCGGAGCACGAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTC 39510 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || ||||| || || || || || || || || ||||| || || Sbjct 39509 GGCCAGAGTGCGACCGTCCTCAAGCTGCTTACCGGCGAATATAAGGCGCTGCTGGTCGGG 39450 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TT 140685 ||||| || || || ||||| || || || || || || |||| || | ||| || Sbjct 39449 GGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTC-GCTGGATT 39391 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || |||| ||||| || || | || || || || |||||||| Sbjct 39390 CCACCTCGAGAGTAATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 39339 >seq68691 Length=2609 Score = 100 bits (110), Expect = 9e-16 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || ||||| ||||| ||||| || || || || Sbjct 421 CATACCACCACGCAGACGAAGCACGAGGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTC 362 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || || || || || || |||||||| || || ||||| || || Sbjct 361 GGCGAGGGTGCGACCGTCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGG 302 Query 140627 AGGAATTCCTTCTTTATCCTGAAT-TTTAGCTTTTACATTATCAATCGAATCAGATGG-T 140684 || || || || || ||||| || ||| || || || || || |||| || | ||| Sbjct 301 CGGGATGCCCTCCTTGTCCTGGATCTTTTGC-TTCACGTTCTCGATCGTGTC-GCTGGAC 244 Query 140685 TCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || |||| ||||| || || || || || || || |||||||| Sbjct 243 TCCACCTCGAGAGTAATGGTCTTGCCCGTAAGGGTCTTGACGAAGATCTGCAT 191 Score = 86.0 bits (94), Expect = 2e-11 Identities = 120/166 (72%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || ||||| ||||| || || || || || || Sbjct 193 CATACCACCACGNAGGCGGAGCACGAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTC 134 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || ||||| || || || || ||||| || || ||||| || || Sbjct 133 GGCCAGAGTGCGACCGTCCTCAAGCTGCTTACCGGCGAAGATAAGGCGCTGCTGGTCGGG 74 Query 140627 AGGAATTCCTTCTTTATCCTGAAT-TTTAGCTTTTACATTATCAAT 140671 ||||| ||||| || ||||| || ||| || || || || ||||| Sbjct 73 GGGAATGCCTTCCTTGTCCTGGATCTTTTGC-TTCACGTTCTCAAT 29 >seq72303 Length=46806 Score = 96.9 bits (106), Expect = 1e-14 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || ||||| ||||| || || || || || || Sbjct 30553 CATACCACCACGCAGGCGGAGCACGAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTC 30494 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || ||||| || || || || ||||| || || ||||| || || Sbjct 30493 GGCCAGAGTGCGACCGTCCTCAAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCGGG 30434 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TT 140685 ||||| || || || ||||| || || || || || ||||| | || | ||| || Sbjct 30433 GGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCAATGGTGTC-GCTGGATT 30375 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || | ||||| || || || || || || || |||||||| Sbjct 30374 CCACCTCGAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAGATCTGCAT 30323 >seq72197 Length=52184 Score = 96.9 bits (106), Expect = 1e-14 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || ||||| ||||| || || || || || || Sbjct 20881 CATACCACCACGCAGGCGGAGCACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTC 20822 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || || || || || || || ||||| || || Sbjct 20821 AGCAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCGGG 20762 Query 140627 AGGAATTCCTTCTTTATCCTGAAT-TTTAGCTTTTACATTATCAATCGAATCAGATGG-T 140684 || || || || || ||||| || || || || || || || |||| || | ||| Sbjct 20761 GGGGATGCCCTCCTTGTCCTGGATCTTYTGC-TTCACGTTCTCGATCGTGTC-GCTGGAC 20704 Query 140685 TCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || |||| ||||| ||||| || || || ||||| |||||||| Sbjct 20703 TCCACCTCGAGGGTAATGGTCTTGCCGGTCAGGGTCTTAACAAATATCTGCAT 20651 >seq71007 Length=21584 Score = 91.5 bits (100), Expect = 4e-13 Identities = 75/89 (84%), Gaps = 3/89 (3%) Strand=Plus/Plus Query 423765 AGCATGGATGCCCGAGT-GGTCTAAGGGGGCAGACTTAAGATCTGCTGGCG--AAAGCCT 423821 ||| |||||| |||||| ||||||||| ||||||||||||||||||||| | || || Sbjct 10641 AGCCTGGATGGCCGAGTTGGTCTAAGGCGGCAGACTTAAGATCTGCTGGTGGCAACACCG 10700 Query 423822 CGTGGGTTCAAACCCCACTCCGTGCATTT 423850 ||||||||| ||||||||||| ||| || Sbjct 10701 CGTGGGTTCGAACCCCACTCCAGGCAATT 10729 >seq71226 Length=68202 Score = 89.7 bits (98), Expect = 2e-12 Identities = 393/618 (64%), Gaps = 12/618 (2%) Strand=Plus/Plus Query 349201 TATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGT 349260 ||| || |||||| | ||||| || |||||| || | | ||| | || | || || Sbjct 58797 TATCGGTATCGATCTTGGTACCACCTATTCTGTCGTCGGCATCTGGAAGAACGGCCGCGT 58856 Query 349261 AGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGA 349320 || || || || || || || || ||| | | || || || || || || || || || Sbjct 58857 GGACATCATCGCCAACGACCAGGGCAACCGTATCACTCCCTCGTATGTGGCCTTCACTGA 58916 Query 349321 AACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATAC 349380 | |||||| | || || || | || || ||||| || ||| ||| || | || || Sbjct 58917 GAGCGAGCGTCTCATCGGAGACGCCGCTAAGAATCAGGCCGCTCTTAACCCCGAGAACAC 58976 Query 349381 GGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGA 349440 || || || | ||||| || || ||| | | ||| ||||||| || |||| Sbjct 58977 TGTCTTCGACGTCAAGCGTCTCATCGGTCGCAACTTTGGTGACAAAGAAGTTCAGGCTGA 59036 Query 349441 TCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGA-CGGTGATAAACCAATTATTGAGG 349499 || | | | |||| | | | | | |||| ||| || || || | | Sbjct 59037 CGCCAAGCTTCTGCCTTACAA-GATCACCAACAAGAACGGC---AAGCCCTACATCAACG 59092 Query 349500 TTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAG 349559 || | | || |||||| || |||| || || || ||||| | |||||| | Sbjct 59093 TTAACTTCAAGGGTGAATCCAAGGAATTCGCTCCTGAGGAGATTTCCGCCATGGTTCTCA 59152 Query 349560 TTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTA 349619 || |||||||| || || || || || | || | || || | | || || | | Sbjct 59153 CCAAGATGAAGGAGATCGCCGAGGCTTACCTTGGCAAGACCGTCAAGAACGCCGTAGTCA 59212 Query 349620 CTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTG 349679 |||| || ||||| || || || ||||||||| || || || ||||| || ||||| Sbjct 59213 CTGTTCCGGCCTACTTCAACGACGCCCAGCGTCAGGCCACCAAGGATGCCGGTGTCATTG 59272 Query 349680 CGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGC 349739 | || | || ||| | | || || || || ||||| || || || || || || || | Sbjct 59273 CCGGTCTCAACGTTGTCCGTATTATCAACGAGCCCACCGCCGCCGCCATCGCGTACGGCC 59332 Query 349740 TTGATAAAATGAG--TGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 | || ||| | | || || || || || | || ||||| ||||||||||| Sbjct 59333 TC-----AACGAGGTTAAGGGTGAGAAGAACATCCTCGTCTTCGATTTGGGTGGTGGTAC 59387 Query 349798 TTTTGATGTATCACTACT 349815 ||||||||| || ||||| Sbjct 59388 TTTTGATGTGTCGCTACT 59405 >seq44037 Length=160 Score = 84.2 bits (92), Expect = 7e-11 Identities = 111/153 (73%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||||| | || || || || ||||| ||||| || || || || || || Sbjct 157 CATACCACCACGTAGGCGGAGCACGAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTC 98 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || ||||| ||||| || || ||||| || || Sbjct 97 AGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGG 38 Query 140627 AGGAATTCCTTCTTTATCCTGAAT-TTTAGCTT 140658 || || || || || ||||| || ||| |||| Sbjct 37 GGGGATGCCCTCCTTGTCCTGGATCTTTTGCTT 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1513848598581033