Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq71032 194 2e-44 seq70189 91.5 2e-13 seq71380 89.7 6e-13 seq71361 82.4 8e-11 >seq71032 Length=21228 Score = 194 bits (214), Expect = 2e-44 Identities = 475/704 (67%), Gaps = 16/704 (2%) Strand=Plus/Plus Query 53272 CTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAG 53331 ||| || ||||| || || ||||| ||||| || || || || ||| ||| | || Sbjct 14474 CTTCACCCACGCTACCCCTACCCTCTTCAATGCCGGCACTCCTCGCCCGCAGCTTTCTTC 14533 Query 53332 CTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGA 53391 |||||||| | | ||||| || ||||| || || || |||||||| || |||||| | Sbjct 14534 GTGCTTCCTCCTTACCATGAAAGAGGACTCAATTGAAGGGATCTACGACACTCTCAAGCA 14593 Query 53392 GTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGT 53449 |||||||| |||||| |||| | || |||||||| | ||| | | || |||| Sbjct 14594 GTGTGCCCTCATCTCTAAGTCCGCTGGGGGTATCGGCCTTG-CTGTAC-ACCGCATCCGA 14651 Query 53450 GCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTC 53509 || | | | ||| || || |||||| | | |||| || | || ||||| Sbjct 14652 GCTTCCAACTCTTACATCCGCGGCACCAACGGCACCTCGAATGGTCTCATTCCGATGCTT 14711 Query 53510 CGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCG 53569 ||||| | |||| |||| || || ||||| |||| ||||| || ||||||||||| | Sbjct 14712 CGCGTATACAACGACACTGCTCGCTACGTTGACCAAGGTGGCGGTAAGCGCAAGGGAGCC 14771 Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTG 53629 || ||||||||||| ||||| ||||| ||||| || | || || |||||||| | Sbjct 14772 TTTGCCATCTACCTTGAGCCCTGGCATGCCGATATCTTCGAATTCCTCGAGCTCAAGAAG 14831 Query 53630 AATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTT-TACAGCTCTGTGGATTCCGG 53687 ||||| ||| | || ||| || ||| || || || || ||| | | ||||| |||| | Sbjct 14832 AATCACGGTAAGGAGGAGCACCG-TGCTCGCGATCTCTTCTAC-GGTTTGTGGGTTCCCG 14889 Query 53688 ACCTCTTCATGCAAAAGGTG-GAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAG 53746 |||| |||||| | ||| | || || || || |||| || | ||||| |||||| Sbjct 14890 ACCTTTTCATGGAGCGTGTGCGTGACGG-CGGTGACTGGTCGCTCTTCTGCCCCAACGAG 14948 Query 53747 TGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACG-TAC-- 53803 ||| || || | | | || || |||||||| || |||| || || ||| Sbjct 14949 GCCCCGGGTCTGTTCGATACTTGGGGAGACGAGTTTAAGCAGCTGTA-CGAGCGCTACGA 15007 Query 53804 GCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTC 53863 |||| |||| ||| | || ||||| | || | ||| | |||||| Sbjct 15008 GCAG--GAGGGTCGCGCCCGCCGTGTCGTGAAGGCTCAGGAACTCTGGTTCTCTATCCTC 15065 Query 53864 AAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAG 53923 || ||| | |||||||| || || |||||| ||||||||| || |||| ||| Sbjct 15066 GAGTCTCAGATTGAGACGGGCACTCCCTACATGCTCTACAAGGACTCCTGCAACCGCAAG 15125 Query 53924 AGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATG 53967 |||||| || || ||||| |||| | ||| |||||| || Sbjct 15126 TCTAACCAGCAGCACCTCGGCACCATCCAGTCGTCCAACTTGTG 15169 Score = 192 bits (212), Expect = 6e-44 Identities = 312/444 (70%), Gaps = 5/444 (1%) Strand=Plus/Plus Query 55487 AACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAAC 55546 ||||| |||||||| || || ||||| || || ||||| |||||||| | ||||| ||| Sbjct 15666 AACTCGCTGCTCGTCGCTCCTATGCCCACTGCCTCGACCTCTCAGATCCTCGGCAATAAC 15725 Query 55547 GAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTT 55606 ||| |||||||| ||||| ||||||||||| ||||| | ||| || ||||| ||| Sbjct 15726 GAGTGCTTCGAGCCCTACACCTCCAACATCTACACTCGCCGCATCCTTGCTGGTGACTTT 15785 Query 55607 GTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG 55666 | | ||||| ||||||| || ||||| ||| || | | |||| ||| Sbjct 15786 ACCGTCGTCAACGAGCACCTGCTCCGTGACCTTCAGGAGCGCGGCCTGTGGTCCCCCGCC 15845 Query 55667 ATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGA--ATCT-GGAGATTCCTCTG 55723 |||||| | | ||| || || || || ||| ||| |||||| ||| Sbjct 15846 CTCAAGAACAAGCTGGTGGCCCACAACGGTTCGGTGCAGCGCATCGAGGAGATACCTGAC 15905 Query 55724 CGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGT-CTGATTGACAT 55782 ||||||| || ||||| ||| |||||||||||||| ||| | || | || ||||| Sbjct 15906 GATCTCAAGAAGCTTTACAAGACAGTGTGGGAGATTCCTCAG-CGTGTAGTAATCGACAT 15964 Query 55783 GAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAA 55842 | ||| ||||| || || || ||||| || ||||| ||||| | ||||| | Sbjct 15965 GGCTGCCGATCGCTCCGCTTATATTGACCAAAGTCAATCTCTCAACATTTACATGGGCGA 16024 Query 55843 TCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGAC 55902 ||||| | |||||| | | || |||||||| |||| ||||| ||||| || ||||| Sbjct 16025 GCCTTCTTTCGCCAAGCTTACGTCCATGCACTTCTACGCCTGGAATAAGGGTCTGAAGAC 16084 Query 55903 GGGTATGTACTATCTGCGGACCCG 55926 || |||||||| ||||| ||||| Sbjct 16085 TGGCATGTACTACCTGCGAACCCG 16108 >seq70189 Length=21413 Score = 91.5 bits (100), Expect = 2e-13 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 117388 GTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTC 117447 |||||||| ||| ||||| || |||| || || || || | || || |||||| Sbjct 16113 GTTGTTGGAGCCGGGGAAGTTCTGGGCCATGTGCACGATGGTGGCGTGCAGCGACGCCTC 16172 Query 117448 ACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC 117507 || || || || ||||||||||| ||||| ||||| |||||||| ||||| ||||| || Sbjct 16173 GCCGTGATGGTAGGCCGTCTGCTCGGCCACATAGCCGGCCAGCTGCGCCACTTTCATTTC 16232 Query 117508 TGACGT-CAGGTTCTTCTTGAGGCAGGCATAAATCACCT 117545 | || ||| ||| ||||| ||| ||||| | |||| Sbjct 16233 -GTTGTGCAGCTTCCGCTTGAAGCATGCATACAGGACCT 16270 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 152073 CCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATT 152132 ||| || || || || || | ||| ||||| || |||||||| ||| ||| || Sbjct 16074 CCGTGTCCCGAATTGGCCGGCGGGGAACAGGAGCGGGACGTTGTTGGAGCCGGGGAAGTT 16133 Query 152133 CTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTG 152192 ||| |||| | ||| || ||| | ||||| ||| || ||||| || || |||||||| Sbjct 16134 CTGGGCCATGTGCACGATGGTGGCGTGCAGCGACGCCTCGCCGTGATGGTAGGCCGTCTG 16193 Query 152193 CTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGT-CAGGTTCTTCTTGA 152251 ||| || | || || |||| ||||||||| ||||| | ||| || ||| ||| ||||| Sbjct 16194 CTCGGCCACATAGCCGGCCAGCTGCGCCACTTTCAT-TTCGTTGTGCAGCTTCCGCTTGA 16252 Query 152252 GACAGGCGTAAATCACCT 152269 || || || | |||| Sbjct 16253 AGCATGCATACAGGACCT 16270 >seq71380 Length=37783 Score = 89.7 bits (98), Expect = 6e-13 Identities = 185/269 (69%), Gaps = 6/269 (2%) Strand=Plus/Minus Query 117326 GCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTC 117385 || |||||||| || || || || ||||||| ||| ||| |||||||||| Sbjct 26706 GCGGCATCCTTACCGCCTTGAATGCGACTACCGAAGCTGCCAGAGGGCACCAAGAGGTTG 26647 Query 117386 AGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAG-GCTCG- 117443 | |||||| | |||||||| || || |||| || |||||| |||| || | Sbjct 26646 ATGTTGTTCGACCCCACAAAATTGTGGGCCATTCCGATAATCGT--CTTGTTCAGCGAGT 26589 Query 117444 CCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCA 117503 |||| || ||||| || |||| || || |||||| || |||||||| ||| | | Sbjct 26588 CCTCTCCGTGGTGGTAGGCCGAGTGGAGCGACACGTAACCGCTGAGCTGAGCGACCCTTA 26529 Query 117504 TGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCA 117563 |||| | | | ||| || ||||||| | ||| | | ||||||||| | || || | Sbjct 26528 TGTCCTCCCTGATGTTTTTGCTGAGGCATGTATAGAGGATCTTGCGCTGGCCGGGTTTGA 26469 Query 117564 GACCATCCGCCACGTGA-GGGATCGAACG 117591 | ||||| ||| | || ||||||||||| Sbjct 26468 GGCCATCAACCA-GAGATGGGATCGAACG 26441 >seq71361 Length=36657 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 159373 CGAATTGCTTCAAGAATTCGAAGGGTACCCATGGCGTCGACGTTCGCCGTGTACTCGGGC 159432 || || || ||||||| ||||| || |||||||||||||||| || |||||||| | | Sbjct 33264 CGGATGGCCTCAAGAAGACGAAGCGTGCCCATGGCGTCGACGTCTGCTGTGTACTCCGCC 33323 Query 159433 TGCTCAAAAGAGAGCTTCACGTGTGACTGGGCTCCGAGGTTATAGACCTC 159482 ||| ||||| | |||||||| ||| ||| |||| ||||| || || Sbjct 33324 ACCTCGAAAGACACTTTCACGTGGCTCTGTGCTGCGAGATTATACACTTC 33373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546720694277800