Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq71540 120 2e-22 seq71761 102 5e-17 seq72197 100 2e-16 seq68691 100 2e-16 seq71072 98.7 6e-16 seq72303 93.3 3e-14 seq68586 91.5 9e-14 seq72113 86.0 4e-12 >seq71540 Length=49709 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| | || |||||||||||| || |||||||||||| || || || | Sbjct 42959 CCCCCACGAAGTCTCAGCACCAAATGGAGGGTAGACTCCTTTTGAATATTGTAGTCGGCC 42900 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| ||||| || || || ||||| || | ||||| ||||| ||||| Sbjct 42899 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAAATAAGTCGCTGCTGGTCAGGCGGG 42840 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | |||||||||||| |||||||| |||| | || |||||| |||||| Sbjct 42839 ATGCCCTCCTTGTCTTGTATCTTTTGCTTTACGTTTTCTATGGTGTCTGAAGACTCCACC 42780 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | ||| || || || || || | ||| || ||||| || |||||| || Sbjct 42779 TCGAGGGTAATGGTCTTCCCCGTCAGCGTCTTAACAAAGATTTGCATGGTG 42729 >seq71761 Length=19511 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || || |||||||| | |||||||| |||||||||||||| || || | Sbjct 7952 CCACCCCTGAGTCGCAACACAAGGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGCC 8011 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| ||||| || || ||||| || || | |||||| ||||| || || Sbjct 8012 AGAGTGCGACCGTCCTCAAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCGGGGGGG 8071 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||||| || || ||| | || ||||| | ||| || Sbjct 8072 ATGCCTTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCGATCGTGTCGCTGGACTCGAC 8130 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || || || || || |||||||| || || |||||||| Sbjct 8131 CTCGAGAGTAATGGTCTTGCCAGTCAACGTTTTGACGAAGATCTGCAT 8178 Score = 89.7 bits (98), Expect = 3e-13 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||| | ||||||||| |||||| || ||||| || || | || || || Sbjct 8189 AGGCGGAGCACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGA 8248 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| || |||||||| || || | ||||| ||||| || || | || ||| Sbjct 8249 CCGTCCTCAAGCTGCTTACCGGCGAAGATAAGGCGCTGCTGGTCGGGGGGAATGCCTTCC 8308 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||||| || || | || | || ||||| | ||| || || | || Sbjct 8309 TTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGAGT 8367 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || || || || | || || || ||||||||||||||| Sbjct 8368 AATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCATGTTG 8410 >seq72197 Length=52184 Score = 100 bits (110), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 |||||||| |||||| || ||||| || || | ||| || || |||| || || || Sbjct 20853 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCGTCCTCGAGCTGC 20794 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || | ||||| ||||| || || | ||||||||||| |||||| Sbjct 20793 TTGCCGGCGAAAATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTY 20734 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || ||| | || ||||| | |||||| || | ||| || || || ||||| Sbjct 20733 TG-CTTCACGTTCTCGATCGTGTCGCTGGACTCCACCTCGAGGGTAATGGTCTTGCCGGT 20675 Query 34683 TAACGTTTTCACAAAAATCTGCATGTTG 34710 | || || ||||| |||||||||||| Sbjct 20674 CAGGGTCTTAACAAATATCTGCATGTTG 20647 >seq68691 Length=2609 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| || ||||||||| ||||| || || | || || || |||| || ||||| Sbjct 621 TGGAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCGAGCGTGCGGCCGTCCTCGAGTTGC 562 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || |||||||| || | ||||| ||||| || || | ||||||||||| ||||||| Sbjct 561 TTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTT 502 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || ||| | ||| ||||| | |||||| || | ||| || || || ||||| Sbjct 501 TG-CTTCACGTTCTCAATGGTGTCGCTGGACTCCACCTCGAGGGTAATAGTCTTGCCGGT 443 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | || || || || |||||||| Sbjct 442 GAGGGTCTTGACGAAGATCTGCAT 419 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| | |||||||| ||||||||| ||||| || || | || || || Sbjct 408 AGACGAAGCACGAGGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGCGAGGGTGCGA 349 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || |||||||| || | ||||| ||||| ||||| | |||||| Sbjct 348 CCGTCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCC 289 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||||||||| || ||| | || ||||| | |||||| || | || Sbjct 288 TTGTCCTGGATCTTTTG-CTTCACGTTCTCGATCGTGTCGCTGGACTCCACCTCGAGAGT 230 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || || || || |||||||| Sbjct 229 AATGGTCTTGCCCGTAAGGGTCTTGACGAAGATCTGCAT 191 >seq71072 Length=54149 Score = 98.7 bits (108), Expect = 6e-16 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || ||| || | || || | ||| | |||||||| ||||||||||||||| || || Sbjct 13818 GTTGCCACCGCGCAGGCGAAGCACAAGGTGGAGAGTCGACTCCTTTTGAATGTTGTAGTC 13877 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 | || || || |||| || || || || ||||| || || | ||||| ||||| || Sbjct 13878 GGCGAGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGG 13937 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCT 34654 || | ||||||||||| |||||| || || ||| | ||| ||||| | || Sbjct 13938 GGGAATGCCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCAATGGTGTCGCTGGACT 13996 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| || | ||| || || || ||||| | || || || || ||||||||| Sbjct 13997 CCACCTCGAGGGTAATAGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCATG 14049 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| | ||||| || |||||| || ||||| || || | || || || Sbjct 14059 AGACGAAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGG 14118 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || || || || || | ||||| ||||| ||||| | |||||| Sbjct 14119 CCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCC 14178 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||||||||| ||| ||| | ||| ||||| | |||||| || | ||| Sbjct 14179 TTGTCCTGGATCTTTTGCTTT-ACGTTCTCAATGGTGTCGCTGGACTCCACCTCAAGGGT 14237 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | || || || || ||||||||| Sbjct 14238 GATGGTCTTGCCCGTAAGAGTCTTGACGAAGATCTGCATG 14277 >seq72303 Length=46806 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 |||||||| |||||| || ||||| || || | || || || |||| ||||| || Sbjct 30525 TGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGACCGTCCTCAAGCTGC 30466 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 |||||||| || || | ||||| ||||| || || | ||||||||||| |||||| Sbjct 30465 TTACCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTC 30406 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || ||| | ||| ||||| | ||||| || | ||| || || || || || Sbjct 30405 TG-CTTCACGTTCTCAATGGTGTCGCTGGATTCCACCTCGAGGGTGATGGTCTTGCCCGT 30347 Query 34683 TAACGTTTTCACAAAAATCTGCATGTTG 34710 | || || || || |||||||||||| Sbjct 30346 AAGGGTCTTGACGAAGATCTGCATGTTG 30319 >seq68586 Length=2644 Score = 91.5 bits (100), Expect = 9e-14 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| || |||||| || ||||| || || | || || || |||| || ||||| Sbjct 429 TGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCGAGTTGC 370 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || |||||||| || | ||||| ||||| ||||| | ||||||||||| |||||| Sbjct 369 TTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTC 310 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || ||| | ||| ||||| | |||||| || | ||| || || || || || Sbjct 309 TG-CTTCACGTTCTCAATGGTGTCGCTGGACTCCACCTCAAGGGTGATGGTCTTGCCCGT 251 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | || || || || |||||||| Sbjct 250 AAGGGTCTTGACGAAGATCTGCAT 227 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| || ||||||||| ||||| || || | || || || |||| || || || Sbjct 657 TGGAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCGAGGGTGCGACCGTCCTCGAGCTGC 598 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || || || || || | |||||| ||||| || || | ||||||||||| |||||| Sbjct 597 TTGCCAGCGAAAATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTC 538 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || ||| | || ||||| | |||||| || | || || || || || || Sbjct 537 TG-CTTCACGTTCTCGATCGTGTCGCTGGACTCCACCTCGAGAGTAATGGTCTTGCCAGT 479 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 |||||||| || || |||||||| Sbjct 478 CAACGTTTTGACGAAGATCTGCAT 455 >seq72113 Length=77669 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 |||||||| |||||| || ||||| || || | || || || |||| ||||| || Sbjct 39541 TGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGACCGTCCTCAAGCTGC 39482 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 |||||||| ||||| | ||||| ||||| || || | ||||||||||| |||||| Sbjct 39481 TTACCGGCGAATATAAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTC 39422 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || ||| | || ||||| | ||||| || | || || || || || || Sbjct 39421 TG-CTTCACGTTCTCGATCGTGTCGCTGGATTCCACCTCGAGAGTAATGGTCTTGCCAGT 39363 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 || || || || || |||||||| Sbjct 39362 CAAAGTCTTGACGAAGATCTGCAT 39339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314451848275763