Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq68691 122 6e-23 seq71761 109 4e-19 seq68586 107 1e-18 seq71822 84.2 1e-11 >seq68691 Length=2609 Score = 122 bits (134), Expect = 6e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| ||||| || || || |||||||| || || |||| Sbjct 191 ATGCAGATCTTCGTCAAGACCCTTACGGGCAAGACCATTACTCTCGAGGTGGAGTCCAGC 250 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||||| || ||||| || || | ||||| || || Sbjct 251 GACACGATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 310 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || ||||| |||| ||||| | | ||| |||||| Sbjct 311 CAGCGCCTCATCTTTGCCGGCAAGCAGCTGGAGGACGGTCGCACCCTCGCCGACTACAAC 370 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 371 ATCCAAAAGGAGTCGAC 387 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || || || ||||| || || |||| Sbjct 419 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACTATTACCCTCGAGGTGGAGTCCAGC 478 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || ||||| || ||||| || || | || || || || Sbjct 479 GACACCATTGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 538 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| ||||| || |||| ||||| | | || |||||| Sbjct 539 CAGCGCCTCATCTTTGCCGGCAAGCAACTCGAGGACGGCCGCACGCTCGCTGACTACAAC 598 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 599 ATCCAAAAGGAGTCTAC 615 >seq71761 Length=19511 Score = 109 bits (120), Expect = 4e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || |||||||| || || || || |||||||| || || ||| Sbjct 8409 AACATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACCATTACTCTCGAGGTCGAGTCC 8350 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || || ||||| ||||| | || || || Sbjct 8349 AGCGACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATTCCCCCCGAC 8290 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| | || || ||||| || || || || |||| |||||| | | ||| ||| Sbjct 8289 CAGCAGCGCCTTATCTTCGCCGGTAAGCAGCTTGAGGACGGTCGCACTCTGGCCGACTAC 8230 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || ||||| || Sbjct 8229 AACATCCAGAAGGAGTCGAC 8210 >seq68586 Length=2644 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| ||||| || || ||||| || || || || |||| Sbjct 227 ATGCAGATCTTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTGGAGTCCAGC 286 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || || ||||| || || | ||||| || || Sbjct 287 GACACCATTGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 346 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| ||||| || |||| ||||| | | || |||||| Sbjct 347 CAGCGCCTCATCTTTGCCGGCAAGCAACTCGAGGACGGCCGCACCCTCGCTGACTACAAC 406 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 407 ATCCAGAAGGAGTCTAC 423 >seq71822 Length=82145 Score = 84.2 bits (92), Expect = 1e-11 Identities = 155/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||| ||| ||||| ||||||||||| || || || ||||||||||| || | ||| Sbjct 74434 ATGCGGATATTCGTCAAAACCCTCACCGGCAAGACCATCACTCTCGAGGTCGGGGCCAGC 74493 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGA-CAAAGAAGGTGTACCGCCAGATCA 23729 ||||| || | | | || | | | | | || ||| || || | || || || || Sbjct 74494 GACACGGTCAACAGCGTGAAGC-AGCAGGTCCAGACCAAGGAGGGCATTCCTCCCGAGCA 74552 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || |||||||| || || || |||| |||| | | ||| ||||| Sbjct 74553 GCAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCAGCCTGGCCGACTACAA 74612 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGG 23834 ||| || || ||||| || | ||| | || ||||| |||| || Sbjct 74613 CATCCAGAAGGAGTCGACTCTCCATCTCGTCTTAAGCCTGCGCGG 74657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337711303464788