Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq71761 95.1 1e-14 seq68586 82.4 6e-11 >seq71761 Length=19511 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || || |||||||||||||| ||||| |||||||| | || || ||||| Sbjct 8178 ATGCAGATCTTCGTCAAAACGTTGACTGGCAAGACCATTACTCTCGAGGTCGAGTCCAGC 8119 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | | | | || || || || || ||||| |||||| | ||| ||| || Sbjct 8118 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATCCCCCCCGACCAG 8059 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | ||||||| || ||||| || | || || | ||| ||||||| || || Sbjct 8058 CAGCGTCTTATTTTCGCCGGCAAGCAGCTTGAGGACGGTCGCACTCTGGCCGACTACAAC 7999 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| |||||||| || || | |||||||| || | ||||| Sbjct 7998 ATTCAAAAGGAATCTACTCTCCACCTTGTGTTGCGACTCAGGGGTGG 7952 >seq68586 Length=2644 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || || |||||||||||||| ||||| |||||||| | || ||| ||||| Sbjct 455 ATGCAGATCTTCGTCAAAACGTTGACTGGCAAGACCATTACTCTCGAGGTGGAGTCCAGC 514 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | | | | || || || || || ||||| || ||| ||||| ||| || Sbjct 515 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 574 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | ||||||| || ||||| || | || || | || | || || || || Sbjct 575 CAGCGTCTTATTTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTCGCTGACTACAAC 634 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCAA 111329 || ||||| || ||||| || || | || | || ||||||||||| || Sbjct 635 ATCCAAAAGGAGTCTACCCTCCACCTCGTCCTCCGCCTGCGCGGTGGAAA 684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421438947793336