Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq99508 87.8 2e-12 seq99507 87.8 2e-12 seq99506 87.8 2e-12 seq107474 84.2 2e-11 seq102031 84.2 2e-11 >seq99508 Length=2583 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 || ||||||||| ||| | || ||| |||| || || ||||||||| || ||| | Sbjct 1869 AACAATGCAAATCTTCGTGAAGACACTGACTGGAAAGACCATTACCCTTGAGGTCGAATC 1928 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | | || | | | | | |||||||| || || || ||||| | ||| || Sbjct 1929 CTCTGACTCTATTGAGAACGTCAAGCAAAAGATACAGGACAAGGAAGGCATCCCCCCTGA 1988 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 ||| || | || |||||||| ||||| || || || ||| ||| ||||||| || Sbjct 1989 TCAGCAGCGTCTCATCTTTGCAGGCAAGCAGCTCGAGGATGGTCGCACTTTGGCCGACTA 2048 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||| ||||| ||||| || ||| |||| | || || | ||||| Sbjct 2049 CAATATTCAAAAGGAGTCTACCCTCCACTTGGTCCTTCGTTTGAGGGGAGG 2099 >seq99507 Length=2862 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 || ||||||||| ||| | || ||| |||| || || ||||||||| || ||| | Sbjct 1869 AACAATGCAAATCTTCGTGAAGACACTGACTGGAAAGACCATTACCCTTGAGGTCGAATC 1928 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | | || | | | | | |||||||| || || || ||||| | ||| || Sbjct 1929 CTCTGACTCTATTGAGAACGTCAAGCAAAAGATACAGGACAAGGAAGGCATCCCCCCTGA 1988 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 ||| || | || |||||||| ||||| || || || ||| ||| ||||||| || Sbjct 1989 TCAGCAGCGTCTCATCTTTGCAGGCAAGCAGCTCGAGGATGGTCGCACTTTGGCCGACTA 2048 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||| ||||| ||||| || ||| |||| | || || | ||||| Sbjct 2049 CAATATTCAAAAGGAGTCTACCCTCCACTTGGTCCTTCGTTTGAGGGGAGG 2099 >seq99506 Length=3388 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 || ||||||||| ||| | || ||| |||| || || ||||||||| || ||| | Sbjct 567 AACAATGCAAATCTTCGTGAAGACACTGACTGGAAAGACCATTACCCTTGAGGTCGAATC 508 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | | || | | | | | |||||||| || || || ||||| | ||| || Sbjct 507 CTCTGACTCTATTGAGAACGTCAAGCAAAAGATACAGGACAAGGAAGGCATCCCCCCTGA 448 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 ||| || | || |||||||| ||||| || || || ||| ||| ||||||| || Sbjct 447 TCAGCAGCGTCTCATCTTTGCAGGCAAGCAGCTCGAGGATGGTCGCACTTTGGCCGACTA 388 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||| ||||| ||||| || ||| |||| | || || | ||||| Sbjct 387 CAATATTCAAAAGGAGTCTACCCTCCACTTGGTCCTTCGTTTGAGGGGAGG 337 >seq107474 Length=3350 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || || | || || ||||| ||||| ||||| ||| || ||| || | Sbjct 1984 AATGCAGATCTTTGTGAAGACTTTGACTGGCAAGACCATCACCCTTGAGGTCGAATCCTC 2043 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || | | | | | |||||||| || || ||||| || | ||| ||||| Sbjct 2044 TGATTCCATTGAGAACGTAAAGCAAAAGATCCAGGACAAAGAGGGCATCCCCCCTGATCA 2103 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || | || ||||| || ||||| || || || ||| | || ||||||||||||| Sbjct 2104 GCAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCTTGGCCGATTACAA 2163 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||||| ||||| |||||||||||| ||||| Sbjct 2164 CATTCAAAAGGAGTCTACTCTTCACTTGGTG 2194 >seq102031 Length=4190 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 29040 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 29099 ||||| |||||| || || ||||| | || ||||||||| | || |||||||| Sbjct 898 AAGCAGAAAATTCAGGACAAGGAAGGCATCCCACCAGATCAACAGCGCCTCATCTTTGCA 839 Query 29100 GGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACT 29159 ||||| || || || ||| || |||| || ||||| || |||||||| |||||| Sbjct 838 GGCAAGCAGCTTGAGGATGGTCGTACCTTGGCTGACTACAACATCCAGAAGGAGTCTACT 779 Query 29160 CTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| ||||| | |||| || ||||| Sbjct 778 CTTCATCTGGTGCTCAGATTGCGTGGAGG 750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427773695758670