Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq99508 93.3 3e-14 seq99507 93.3 3e-14 seq99506 93.3 3e-14 seq107536 87.8 1e-12 seq95317 87.8 1e-12 seq95316 87.8 1e-12 seq107474 84.2 2e-11 >seq99508 Length=2583 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 25031 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 25090 || ||||||||| ||| | || ||| |||| || || ||||||||| || ||| | Sbjct 1869 AACAATGCAAATCTTCGTGAAGACACTGACTGGAAAGACCATTACCCTTGAGGTCGAATC 1928 Query 25091 CGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 25150 | | || | | | | |||||||||| || || || ||||| | ||| || Sbjct 1929 CTCTGACTCTATTGAGAACGTCAAGCAAAAGATACAGGACAAGGAAGGCATCCCCCCTGA 1988 Query 25151 TCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTA 25210 ||| || | || |||||||| ||||| || | || ||| ||| ||||||| || Sbjct 1989 TCAGCAGCGTCTCATCTTTGCAGGCAAGCAGCTCGAGGATGGTCGCACTTTGGCCGACTA 2048 Query 25211 CAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||||||||| ||||| || ||| |||| | || || | ||||| Sbjct 2049 CAATATTCAAAAGGAGTCTACCCTCCACTTGGTCCTTCGTTTGAGGGGAGG 2099 >seq99507 Length=2862 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 25031 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 25090 || ||||||||| ||| | || ||| |||| || || ||||||||| || ||| | Sbjct 1869 AACAATGCAAATCTTCGTGAAGACACTGACTGGAAAGACCATTACCCTTGAGGTCGAATC 1928 Query 25091 CGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 25150 | | || | | | | |||||||||| || || || ||||| | ||| || Sbjct 1929 CTCTGACTCTATTGAGAACGTCAAGCAAAAGATACAGGACAAGGAAGGCATCCCCCCTGA 1988 Query 25151 TCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTA 25210 ||| || | || |||||||| ||||| || | || ||| ||| ||||||| || Sbjct 1989 TCAGCAGCGTCTCATCTTTGCAGGCAAGCAGCTCGAGGATGGTCGCACTTTGGCCGACTA 2048 Query 25211 CAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||||||||| ||||| || ||| |||| | || || | ||||| Sbjct 2049 CAATATTCAAAAGGAGTCTACCCTCCACTTGGTCCTTCGTTTGAGGGGAGG 2099 >seq99506 Length=3388 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 25031 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 25090 || ||||||||| ||| | || ||| |||| || || ||||||||| || ||| | Sbjct 567 AACAATGCAAATCTTCGTGAAGACACTGACTGGAAAGACCATTACCCTTGAGGTCGAATC 508 Query 25091 CGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 25150 | | || | | | | |||||||||| || || || ||||| | ||| || Sbjct 507 CTCTGACTCTATTGAGAACGTCAAGCAAAAGATACAGGACAAGGAAGGCATCCCCCCTGA 448 Query 25151 TCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTA 25210 ||| || | || |||||||| ||||| || | || ||| ||| ||||||| || Sbjct 447 TCAGCAGCGTCTCATCTTTGCAGGCAAGCAGCTCGAGGATGGTCGCACTTTGGCCGACTA 388 Query 25211 CAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||||||||| ||||| || ||| |||| | || || | ||||| Sbjct 387 CAATATTCAAAAGGAGTCTACCCTCCACTTGGTCCTTCGTTTGAGGGGAGG 337 >seq107536 Length=9870 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||| || | || |||||||| ||||| || |||||||| | ||| | ||||| Sbjct 347 GATCAGCAGCGTCTGATCTTTGCAGGCAAGCAGTTGGAAGACGGCCGCACTCTTGCCGAC 288 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||||||||||||| ||||| ||| ||||| | || || | ||||| Sbjct 287 TACAATATTCAAAAGGAATCGACTCTCCACTTGGTGCTTCGCTTGAGGGGAGG 235 >seq95317 Length=578 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||| || | || |||||||| ||||| || |||||||| | ||| | ||||| Sbjct 347 GATCAGCAGCGTCTGATCTTTGCAGGCAAGCAGTTGGAAGACGGCCGCACTCTTGCCGAC 288 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||||||||||||| ||||| ||| ||||| | || || | ||||| Sbjct 287 TACAATATTCAAAAGGAATCGACTCTCCACTTGGTGCTTCGCTTGAGGGGAGG 235 >seq95316 Length=972 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||| || | || |||||||| ||||| || |||||||| | ||| | ||||| Sbjct 37 GATCAGCAGCGTCTGATCTTTGCAGGCAAGCAGTTGGAAGACGGCCGCACTCTTGCCGAC 96 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||||||||||||| ||||| ||| ||||| | || || | ||||| Sbjct 97 TACAATATTCAAAAGGAATCGACTCTCCACTTGGTGCTTCGCTTGAGGGGAGG 149 >seq107474 Length=3350 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || || | || || ||||| ||||| ||||| ||| || ||| || | Sbjct 1984 AATGCAGATCTTTGTGAAGACTTTGACTGGCAAGACCATCACCCTTGAGGTCGAATCCTC 2043 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || | | | | | |||||||| || || ||||| || | ||| ||||| Sbjct 2044 TGATTCCATTGAGAACGTAAAGCAAAAGATCCAGGACAAAGAGGGCATCCCCCCTGATCA 2103 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || | || ||||| || ||||| || | || ||| | || ||||||||||||| Sbjct 2104 GCAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCTTGGCCGATTACAA 2163 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||||||||||| |||||||||||| ||||| Sbjct 2164 CATTCAAAAGGAGTCTACTCTTCACTTGGTG 2194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410257520595596