Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq105396 123 5e-23 >seq105396 Length=45554 Score = 123 bits (136), Expect = 5e-23 Identities = 388/588 (66%), Gaps = 15/588 (3%) Strand=Plus/Minus Query 248827 TTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAA 248886 |||| ||||| || |||| || |||||| ||||| | | |||| || ||||| Sbjct 3920 TTTGGCTTCAAGACATTGGAACGCTCTTATCTCTTCAAATTGAACGGCACAATTGTGGAG 3861 Query 248887 CGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGC 248946 | || ||||||||||||||||| ||||| || | |||||| |||||| ||||| Sbjct 3860 AGGCCCCAACACATGTTGATGCGAGTTGCTGTAGGACTGCACAAGACTGACATC-AGAGC 3802 Query 248947 -GTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCT 249005 || | |||||||| | || | ||| | | || |||||||| || || || Sbjct 3801 TGTATTGGAGACGTATAATCTTATCTCTCAACAATTATTCACTCATGCCACTCCCACACT 3742 Query 249006 CTTCAACGCCGGTAC-CGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAG 249064 ||||| || || || | | || | || || |||||||| || || |||||||| Sbjct 3741 TTTCAATGCTGGCACGCCACGACCA-CAACTTTCTTCGTGCTTCCTCGTTAACATGCAAG 3683 Query 249065 ACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAATTCG 249124 | ||| | || || || || ||||||||||||||| || ||||||||| || Sbjct 3682 AAGACAGCATAGAAGGGATATACGACACGCTTAAACAGTGCGCCTTGATTTCTAAGAGCG 3623 Query 249125 CGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTA 249184 | || ||||| ||||| || ||| || || || |||||||||| || | Sbjct 3622 CCGGAGGAATTGGTCTTAGTGTGCACAAAATTCGTGCTGCCAACTCGTACATCAGGGGCA 3563 Query 249185 CAAATGG--GGTCAGTGATGGTATCGTACCCCTCCTTCGA---TGCTTTGAGTCCAC-CG 249238 | || || ||| | ||| || | || | || ||| | | ||| | | || Sbjct 3562 CCAACGGCACGTC--CAACGGTCTCATTCCAATGCTGCGAGTGTACAATGACACAGCACG 3505 Query 249239 CCAGGTTCATCAACCAGGCCGGGCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGT 249298 | | || ||||| || || | ||||| | ||||| || ||| |||| | Sbjct 3504 CTACGTAGATCAAGGTGG-TGGCAAGAGGAAGGGAGCATTCGCAATCTATCTGGAGCCTT 3446 Query 249299 GGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACG-AGCTCATG 249357 ||||||| || || || ||||| |||| ||||||||||| ||||||| | || || | Sbjct 3445 GGCACGCGGACATCTTTGAGTTTTTGGAGCTGAAAAAGAACCACGGCAAGGAAGAGCA-G 3387 Query 249358 AGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405 |||| | || |||||| | | |||||||| |||| |||||||| Sbjct 3386 CGAGCCAGAGATCTCTTCCATGCTCTGTGGGTACCCGATCTGTTCATG 3339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1072284510426752