Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq104633 95.1 1e-14 seq99766 95.1 1e-14 seq99765 95.1 1e-14 >seq104633 Length=6721 Score = 95.1 bits (104), Expect = 1e-14 Identities = 291/443 (66%), Gaps = 19/443 (4%) Strand=Plus/Minus Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTT 14260 ||| ||||| || |||||||||||||||||||| || || | || || |||| | Sbjct 2413 ACAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAG-- 2356 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 | || ||||| | || | || || | |||||| || | | ||| ||| || ||| Sbjct 2355 AGGCCAGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTTCCAGAGAAG 2296 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTC---CAAA----CGATGCTTT 14373 || || || || || || || || || | |||| |||| ||| | ||| Sbjct 2295 AAGATGCCTTCCACGGCGGCGAATGCAACCAATC--TCTCAGGGAAAGTGTCAGTGCCAC 2238 Query 14374 TTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTC 14433 | | ||| |||||||| |||||| |||| ||| || || | | || || || || Sbjct 2237 TCTTTTC--AATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATC 2180 Query 14434 AATAGCATTAAATAAATGTTCCTTCTC--TTTAGTACTTGAAATGTATGTATCAATAAGT 14491 || ||||| || | ||| |||||||| | || ||| | ||| || || || | Sbjct 2179 GATGGCATTGAAGAGATGATCCTTCTCGACGTGGTCCTT--CACGTAGGTGTCGATCAAG 2122 Query 14492 AAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTA 14551 | | ||||||||| ||||| ||||| || || || |||||||| || || || || | | Sbjct 2121 AGGGAATACATTTCCGAGTGAATGTTCTCAATGGCAATCTGAAAGCCGTAGAAGCAGCGA 2062 Query 14552 GCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCA 14611 || || | || | ||||| || | | ||||| || ||| | || || ||| Sbjct 2061 GCCTCAGGAATCTGAATCTCTGTCATGAAGCGCCCAGCCAAGTTCTCAGTCACAATGCCA 2002 Query 14612 TCACTAGCTGCAAAAAATGCCAA 14634 ||| || ||||| || ||||| Sbjct 2001 TCAGAGGCAGCAAAGAAGGCCAA 1979 >seq99766 Length=6639 Score = 95.1 bits (104), Expect = 1e-14 Identities = 291/443 (66%), Gaps = 19/443 (4%) Strand=Plus/Minus Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTT 14260 ||| ||||| || |||||||||||||||||||| || || | || || |||| | Sbjct 1468 ACAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAG-- 1411 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 | || ||||| | || | || || | |||||| || | | ||| ||| || ||| Sbjct 1410 AGGCCAGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTTCCAGAGAAG 1351 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTC---CAAA----CGATGCTTT 14373 || || || || || || || || || | |||| |||| ||| | ||| Sbjct 1350 AAGATGCCTTCCACGGCGGCGAATGCAACCAATC--TCTCAGGGAAAGTGTCAGTGCCAC 1293 Query 14374 TTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTC 14433 | | ||| |||||||| |||||| |||| ||| || || | | || || || || Sbjct 1292 TCTTTTC--AATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATC 1235 Query 14434 AATAGCATTAAATAAATGTTCCTTCTC--TTTAGTACTTGAAATGTATGTATCAATAAGT 14491 || ||||| || | ||| |||||||| | || ||| | ||| || || || | Sbjct 1234 GATGGCATTGAAGAGATGATCCTTCTCGACGTGGTCCTT--CACGTAGGTGTCGATCAAG 1177 Query 14492 AAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTA 14551 | | ||||||||| ||||| ||||| || || || |||||||| || || || || | | Sbjct 1176 AGGGAATACATTTCCGAGTGAATGTTCTCAATGGCAATCTGAAAGCCGTAGAAGCAGCGA 1117 Query 14552 GCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCA 14611 || || | || | ||||| || | | ||||| || ||| | || || ||| Sbjct 1116 GCCTCAGGAATCTGAATCTCTGTCATGAAGCGCCCAGCCAAGTTCTCAGTCACAATGCCA 1057 Query 14612 TCACTAGCTGCAAAAAATGCCAA 14634 ||| || ||||| || ||||| Sbjct 1056 TCAGAGGCAGCAAAGAAGGCCAA 1034 >seq99765 Length=6612 Score = 95.1 bits (104), Expect = 1e-14 Identities = 291/443 (66%), Gaps = 19/443 (4%) Strand=Plus/Minus Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTT 14260 ||| ||||| || |||||||||||||||||||| || || | || || |||| | Sbjct 1468 ACAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAG-- 1411 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 | || ||||| | || | || || | |||||| || | | ||| ||| || ||| Sbjct 1410 AGGCCAGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTTCCAGAGAAG 1351 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTC---CAAA----CGATGCTTT 14373 || || || || || || || || || | |||| |||| ||| | ||| Sbjct 1350 AAGATGCCTTCCACGGCGGCGAATGCAACCAATC--TCTCAGGGAAAGTGTCAGTGCCAC 1293 Query 14374 TTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTC 14433 | | ||| |||||||| |||||| |||| ||| || || | | || || || || Sbjct 1292 TCTTTTC--AATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATC 1235 Query 14434 AATAGCATTAAATAAATGTTCCTTCTC--TTTAGTACTTGAAATGTATGTATCAATAAGT 14491 || ||||| || | ||| |||||||| | || ||| | ||| || || || | Sbjct 1234 GATGGCATTGAAGAGATGATCCTTCTCGACGTGGTCCTT--CACGTAGGTGTCGATCAAG 1177 Query 14492 AAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTA 14551 | | ||||||||| ||||| ||||| || || || |||||||| || || || || | | Sbjct 1176 AGGGAATACATTTCCGAGTGAATGTTCTCAATGGCAATCTGAAAGCCGTAGAAGCAGCGA 1117 Query 14552 GCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCA 14611 || || | || | ||||| || | | ||||| || ||| | || || ||| Sbjct 1116 GCCTCAGGAATCTGAATCTCTGTCATGAAGCGCCCAGCCAAGTTCTCAGTCACAATGCCA 1057 Query 14612 TCACTAGCTGCAAAAAATGCCAA 14634 ||| || ||||| || ||||| Sbjct 1056 TCAGAGGCAGCAAAGAAGGCCAA 1034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481696157825520