Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq107474 93.3 4e-14 seq104239 93.3 4e-14 seq95316 93.3 4e-14 seq94218 86.0 5e-12 >seq107474 Length=3350 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| || || || ||| | || || ||||| || ||| | || |||||||| Sbjct 2212 CATGCAGATTTTCGTAAAGACCCTCACTGGAAAAACCATTACCCTTGAGGTCGAATCCTC 2271 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 ||||| | || | ||| ||| | || || | || || ||| | || |||||| Sbjct 2272 TGACAGCATCGAGAATGTGAAGCAGAAGATCCAAGACAAGGAGGGCATTCCTCCTGACCA 2331 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||||||||| || | ||| ||||| || || || ||| || || ||| |||| Sbjct 2332 GCAACGTTTGATCTTTGCAGGCAAGCAGCTCGAGGATGGTCGTACCTTGGCCGACTACAA 2391 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGTCA 25061 ||| || || ||| | || |||||| | ||| | ||||||| ||||| || Sbjct 2392 CATCCAAAAGGAGTCTACTCTTCATCTGGTGCTCAGATTGCGAGGAGGACA 2442 >seq104239 Length=2864 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/228 (69%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 24834 GCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC-- 24891 |||||| ||||| || || || || ||||| || || || | || || || |||| Sbjct 2864 GCAGATCTTTGTGAAGACATTGACTGGCAAGACCATTACTTTGGAGGTGGA---GAGCTC 2808 Query 24892 -GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 |||||| | || | || ||| | || || | || |||||| | || |||||| Sbjct 2807 TGACAGTATTGAGAACGTCAAGCAGAAGATCCAGGACAAGGAAGGCATCCCNCCTGACCA 2748 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||||||||| || | ||| ||||| ||||| |||||| ||| || || |||| Sbjct 2747 GCAACGTTTGATCTTTGCAGGCAAGCAACTTGAAGATGGTCGTACTCTGGCAGACTACAA 2688 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 ||| ||||| ||| |||| || || | ||| | |||||||| ||||| Sbjct 2687 CATCCAGAAGGAGTCCACTCTCCACCTGGTGCTCCGATTGCGTGGAGG 2640 >seq95316 Length=972 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 |||||| || ||||| || || || || ||||| || || || | || || || ||| Sbjct 378 CATGCAAATCTTTGTGAAGACATTGACTGGCAAGACCATTACTTTGGAGGTGGA---GAG 434 Query 24891 C---GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGA 24947 | ||||| | || | || ||| | || || | || |||||| | ||| ||| Sbjct 435 CTCTGACAGCATTGAGAACGTCAAGCAGAAGATCCAGGACAAGGAAGGCATCCCGCCTGA 494 Query 24948 CCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTA 25007 |||||||||||| || | ||| ||||| ||||| |||||| ||| || || || Sbjct 495 CCAGCAACGTTTGATCTTTGCAGGCAAGCAACTTGAAGATGGTCGTACTCTGGCAGACTA 554 Query 25008 CAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || ||| ||||| ||| |||| || || | ||| | |||||||| ||||| Sbjct 555 CAACATCCAGAAGGAGTCCACTCTCCACCTGGTGCTCCGATTGCGTGGAGG 605 >seq94218 Length=738 Score = 86.0 bits (94), Expect = 5e-12 Identities = 154/224 (69%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 24838 ATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC---GAC 24894 || ||||| || || || || ||||| || || || | || || || |||| ||| Sbjct 1 ATCTTTGTGAAGACATTGACTGGCAAGACCATTACTTTGGAGGTGGA---GAGCTCTGAC 57 Query 24895 AGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAGCAA 24954 || | || | || ||| | || || | || |||||| | ||| |||||||||| Sbjct 58 AGCATTGAGAACGTCAAGCAGAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAA 117 Query 24955 CGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGCATA 25014 ||||| || | ||| ||||| ||||| |||||| ||| || || |||| ||| Sbjct 118 CGTTTGATCTTTGCAGGCAAGCAACTTGAAGATGGTCGTACTCTGGCAGACTACAACATC 177 Query 25015 CAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 ||||| ||| |||| || || | ||| | |||||||| ||||| Sbjct 178 CAGAAGGAGTCCACTCTCCACCTGGTGCTCCGATTGCGTGGAGG 221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417754865410880