Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq105396 89.7 1e-12 >seq105396 Length=45554 Score = 89.7 bits (98), Expect = 1e-12 Identities = 173/253 (68%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 94791 TCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAAT 94850 |||||| || |||| || || | || || ||||| || || || || || || || Sbjct 3615 TCCTCCGGCGCTCTTAGAAATCAAGGCGCACTGTTTAAGCGTGTCGTATATCCCTTCTAT 3674 Query 94851 GCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGT-GTGACTGTTCCAC 94909 ||| || ||||| | | | ||||||||||| |||||||| ||| ||| | || ||| Sbjct 3675 GCTGTCTTCTTGCATGTTAACGAGGAAGCACGAAGAAAGTTGTGGTCGTGGC-GTGCCAG 3733 Query 94910 AATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTT 94969 ||| || |||||||| | ||||| || || | || || || |||| ||| || | Sbjct 3734 CATTGAAAAGTGTGGGAGTGGCATGAGTGAATAATTGTTGAGAGATAAGATTATACGTCT 3793 Query 94970 CAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCT 95029 | | |||| | ||||||| | ||| | || ||||| || ||||| | ||||| | Sbjct 3794 CCAATACAGCTCTGATGTCAGTCTTGTGCAGTCCTACAGCAACTCGCATCAACATGTGTT 3853 Query 95030 GAGGGCGCTCAAC 95042 | || | ||| || Sbjct 3854 GGGGCCTCTCCAC 3866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 988218289346870