Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq104633 250 3e-61 seq99766 250 3e-61 seq99765 250 3e-61 seq105396 197 2e-45 seq96527 84.2 3e-11 >seq104633 Length=6721 Score = 250 bits (276), Expect = 3e-61 Identities = 415/600 (69%), Gaps = 6/600 (1%) Strand=Plus/Minus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| || || ||||| || || ||||| ||||| || || || || || || ||| Sbjct 2413 ACAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAG 2354 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| ||||| | ||| || |||||||| |||||| ||| ||| || ||||| Sbjct 2353 GCCAGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTTCCAGAGAAGAA 2294 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCA----- 33755 ||| ||||| || || || || |||| | |||||| || | | || || Sbjct 2293 GATGCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCAGTGCCACTCTT 2234 Query 33756 -TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 | ||||| || |||||||||| || ||||| || ||| |||||| || || ||||| Sbjct 2233 TTCAATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATCGATGGC 2174 Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874 ||| ||||||| | || || || || || || || |||||||| || ||| Sbjct 2173 ATTGAAGAGATGATCCTTCTCGACGTGGTCCTTCACGTAGGTGTCGATCAAGAGGGAATA 2114 Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934 ||||||||| |||||||| |||||||| |||||||| |||||||| || | |||||| | Sbjct 2113 CATTTCCGAGTGAATGTTCTCAATGGCAATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGG 2054 Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994 |||||| | ||||| || || | || || || ||| |||| || |||||| ||| Sbjct 2053 AATCTGAATCTCTGTCATGAAGCGCCCAGCCAAGTTCTCAGTCACAATGCCATCAGAGGC 1994 Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 34054 ||||| || ||||| ||| || || || | | || || | || || |||| Sbjct 1993 AGCAAAGAAGGCCAACACAGACTTAATGAAGTGCCTCTCATCAGAAGTAAGAGAGCTCCA 1934 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 || ||| ||| || | || || ||||| ||||||| || || ||||| ||||| Sbjct 1933 ATGGTTGTGATCGGAAGCCAGGTCGACCTCTTCGGCTGTCCAGAAGGAGGCCTCAGCCTT 1874 Query 34115 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174 ||| ||||| | ||| ||| || || |||| || || | ||||| | |||||||| Sbjct 1873 TTTGTACATCTCCCAAATGCGTTGGTAACGGATGGGAAACAGCACAAAGCGGTTTGGATT 1814 >seq99766 Length=6639 Score = 250 bits (276), Expect = 3e-61 Identities = 415/600 (69%), Gaps = 6/600 (1%) Strand=Plus/Minus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| || || ||||| || || ||||| ||||| || || || || || || ||| Sbjct 1468 ACAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAG 1409 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| ||||| | ||| || |||||||| |||||| ||| ||| || ||||| Sbjct 1408 GCCAGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTTCCAGAGAAGAA 1349 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCA----- 33755 ||| ||||| || || || || |||| | |||||| || | | || || Sbjct 1348 GATGCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCAGTGCCACTCTT 1289 Query 33756 -TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 | ||||| || |||||||||| || ||||| || ||| |||||| || || ||||| Sbjct 1288 TTCAATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATCGATGGC 1229 Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874 ||| ||||||| | || || || || || || || |||||||| || ||| Sbjct 1228 ATTGAAGAGATGATCCTTCTCGACGTGGTCCTTCACGTAGGTGTCGATCAAGAGGGAATA 1169 Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934 ||||||||| |||||||| |||||||| |||||||| |||||||| || | |||||| | Sbjct 1168 CATTTCCGAGTGAATGTTCTCAATGGCAATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGG 1109 Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994 |||||| | ||||| || || | || || || ||| |||| || |||||| ||| Sbjct 1108 AATCTGAATCTCTGTCATGAAGCGCCCAGCCAAGTTCTCAGTCACAATGCCATCAGAGGC 1049 Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 34054 ||||| || ||||| ||| || || || | | || || | || || |||| Sbjct 1048 AGCAAAGAAGGCCAACACAGACTTAATGAAGTGCCTCTCATCAGAAGTAAGAGAGCTCCA 989 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 || ||| ||| || | || || ||||| ||||||| || || ||||| ||||| Sbjct 988 ATGGTTGTGATCGGAAGCCAGGTCGACCTCTTCGGCTGTCCAGAAGGAGGCCTCAGCCTT 929 Query 34115 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174 ||| ||||| | ||| ||| || || |||| || || | ||||| | |||||||| Sbjct 928 TTTGTACATCTCCCAAATGCGTTGGTAACGGATGGGAAACAGCACAAAGCGGTTTGGATT 869 >seq99765 Length=6612 Score = 250 bits (276), Expect = 3e-61 Identities = 415/600 (69%), Gaps = 6/600 (1%) Strand=Plus/Minus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| || || ||||| || || ||||| ||||| || || || || || || ||| Sbjct 1468 ACAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAG 1409 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| ||||| | ||| || |||||||| |||||| ||| ||| || ||||| Sbjct 1408 GCCAGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTTCCAGAGAAGAA 1349 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCA----- 33755 ||| ||||| || || || || |||| | |||||| || | | || || Sbjct 1348 GATGCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCAGTGCCACTCTT 1289 Query 33756 -TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 | ||||| || |||||||||| || ||||| || ||| |||||| || || ||||| Sbjct 1288 TTCAATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATCGATGGC 1229 Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874 ||| ||||||| | || || || || || || || |||||||| || ||| Sbjct 1228 ATTGAAGAGATGATCCTTCTCGACGTGGTCCTTCACGTAGGTGTCGATCAAGAGGGAATA 1169 Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934 ||||||||| |||||||| |||||||| |||||||| |||||||| || | |||||| | Sbjct 1168 CATTTCCGAGTGAATGTTCTCAATGGCAATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGG 1109 Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994 |||||| | ||||| || || | || || || ||| |||| || |||||| ||| Sbjct 1108 AATCTGAATCTCTGTCATGAAGCGCCCAGCCAAGTTCTCAGTCACAATGCCATCAGAGGC 1049 Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 34054 ||||| || ||||| ||| || || || | | || || | || || |||| Sbjct 1048 AGCAAAGAAGGCCAACACAGACTTAATGAAGTGCCTCTCATCAGAAGTAAGAGAGCTCCA 989 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 || ||| ||| || | || || ||||| ||||||| || || ||||| ||||| Sbjct 988 ATGGTTGTGATCGGAAGCCAGGTCGACCTCTTCGGCTGTCCAGAAGGAGGCCTCAGCCTT 929 Query 34115 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174 ||| ||||| | ||| ||| || || |||| || || | ||||| | |||||||| Sbjct 928 TTTGTACATCTCCCAAATGCGTTGGTAACGGATGGGAAACAGCACAAAGCGGTTTGGATT 869 >seq105396 Length=45554 Score = 197 bits (218), Expect = 2e-45 Identities = 442/656 (67%), Gaps = 6/656 (1%) Strand=Plus/Plus Query 63228 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCA 63287 |||| ||||| | || ||||| ||||| | ||| ||||| | ||| || ||||| Sbjct 3292 TCATTGGGACAAAACAGTGACCAGTCTCCTCCTGCCTCCACTCTCTCCATGAACAGATCG 3351 Query 63288 GGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTT 63347 || | ||| ||||| || |||||||| | || || || || || || |||||| Sbjct 3352 GGTACCCACAGAGCATGGAAGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGTTCTTT 3411 Query 63348 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 63407 || || || | ||| | | || || | ||||| || |||| || || || | || Sbjct 3412 TTCAGCTCCAAAAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCGAATGCT 3471 Query 63408 CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 63467 || || ||| || || ||||||| ||| | || |||| ||| || |||| || | Sbjct 3472 CCCTTCCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCATTGTACACTCGCAGC 3531 Query 63468 ATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATA-GCCTCCACTGGCACG 63526 |||||||| | |||||| || | || ||||| || ||| || | | | | |||| Sbjct 3532 ATTGGAATGAGACCGTTGGACGTGCCGTTGGTGCCCCTGATGTACGAGTTGGCAG-CACG 3590 Query 63527 AATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 63586 ||| || | ||||| ||||| || || | ||||| || || ||||| |||| Sbjct 3591 AATTTTGTGCACACTAAGACCAATTCCTCCGGCGCTCTTAGAAATCAAGGCGCACTGTTT 3650 Query 63587 TAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGA 63646 | |||||| || || ||||||||||| || || |||||||| || || || ||| Sbjct 3651 AAGCGTGTCGTATATCCCTTCTATGCTGTCTTCTTGCATGTTAACGAGGAAGCACGAAGA 3710 Query 63647 CATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 63706 | ||| | || | || || ||||| || | || |||| || || || || ||| Sbjct 3711 AAGTTGTGGTCGTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGTGAATAATTG 3770 Query 63707 TTCAGAAAGTAGATTGTACGTCT-CAATAGCTGAGTCT-ATATCCCATTGATGAATTCCT 63764 || ||| | ||||| ||||||| ||||| | | ||| || || | || | |||| Sbjct 3771 TTGAGAGATAAGATTATACGTCTCCAATA-CAG-CTCTGATGTCAGTCTTGTGCAGTCCT 3828 Query 63765 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAAC 63824 || || || ||||| |||||||| || || || || |||||| || ||| | ||| || Sbjct 3829 ACAGCAACTCGCATCAACATGTGTTGGGGCCTCTCCACAATTGTGCCGTTCAATTTGAAG 3888 Query 63825 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63880 | || || |||||| || || || |||||||| ||| | | ||||||| ||| Sbjct 3889 AGATAAGAGCGTTCCAATGTCTTGAAGCCAAAATAATTGAAAAAGAAGTCTCTTTC 3944 >seq96527 Length=155711 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 33594 CAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGG 33653 ||||| || ||||| ||||| || || ||||| || | ||||| || ||||| | | Sbjct 53894 CAGTGGAGGCCCTCATCTCTGGCGATAAACTCGTTGGAGAGGGTGAGGCCAGGCATGATG 53953 Query 33654 CCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACT 33713 || ||||| || | |||| | |||| | ||| ||| ||||||||||| || || || Sbjct 53954 CCTCGCTTCTTGATCCAATAAATGGCACAGAAGCTTCCAGAAAAGAAGATGCCCTCGACG 54013 Query 33714 GCAGCAAAGGC 33724 ||||||||||| Sbjct 54014 GCAGCAAAGGC 54024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628969597837920