Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq102031 89.7 4e-13 seq106909 84.2 2e-11 >seq102031 Length=4190 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||||| ||| | ||||| ||| | ||| |||||| || | ||||| || | | Sbjct 750 CCTCCACGCAATCTGAGCACCAGATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCC 809 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || || | || ||||| ||||| || | ||||||||||| | || Sbjct 810 AAGGTACGACCATCCTCAAGCTGCTTGCCTGCAAAGATGAGGCGCTGTTGATCTGGTGGG 869 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || ||| || || ||||| | ||| | ||| | ||| || Sbjct 870 ATGCCTTCCTTGTC-CTGAATTTTCTGCTTGACGTTCTCAATAGAGTCAGAGGACTCCAC 928 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || |||||||| || || ||||| ||||| ||||| Sbjct 929 TTCAAGGGTGATGGTCTTTCCGGTGAGCGTCTTCACGAAAATCTGCAT 976 >seq106909 Length=2620 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||||||||| ||| ||||||||| | |||||| |||| ||| || || |||| || Sbjct 2369 CACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCGGCCAAGGTGCGGCCGTCCTC 2428 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATC 42995 ||| || ||||| ||||| |||| ||||| ||||| Sbjct 2429 CAACTGCTTGCCTGCAAAGATCAGGCGCTGCTGATC 2464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380868951575412