Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq104633 187 4e-42 seq99766 187 4e-42 seq99765 187 4e-42 seq105396 125 1e-23 seq96527 120 4e-22 >seq104633 Length=6721 Score = 187 bits (206), Expect = 4e-42 Identities = 581/885 (66%), Gaps = 27/885 (3%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 |||||||||||| | || || ||||||||| ||||||||||||||| |||||||||| Sbjct 1832 CTGTTTCCCATCCGTTACCAACGCATTTGGGAGATGTACAAAAAGGCTGAGGCCTCCTTC 1891 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||| | |||||||||||| ||| | || | || ||||| ||| | || Sbjct 1892 TGGACAGCCGAAGAGGTCGACCTGGCTTCCGATCACAACCATTGGAGCTCTCTTACTTCT 1951 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || |||| | | || || | | |||||||||||||| | ||| ||||| || Sbjct 1952 GA---TGAGAGGCACTTCATTAAGTCTGTGTTGGCCTTCTTTGCTGCCTCTGATGGCATT 2008 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TG 125233 || | || || || || ||| |||| | ||||| |||| ||| || Sbjct 2009 GTGACTGAGAACTTGGCTGGGCGCTTCATGACAGAGATTCAGATTCCTGAGGC-TCGCTG 2067 Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||| ||||| || || || ||||||||| | |||||||||||||| || |||| Sbjct 2068 CTTCTACGGCTTTCAGATTGCCATTGAGAACATTCACTCGGAAATGTATTCCCTCTTGAT 2127 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAACA--CATGCTCTTTAACGCAATCGACACG 125351 |||| ||| | || || | || || ||| ||||| || || ||||| || Sbjct 2128 CGACACCTACGTGAAGGA-CCACGTCGAGAAGGATCAT-CTCTTCAATGCCATCGATACT 2185 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGAC---GACAAG 125408 ||||| ||| | || || ||| | |||| | ||||| || | | || Sbjct 2186 GTGCCTTCTGTCAAGAAGAAAGCTGATTGGGCTCTCAAATGGATTGAAAAGAGTGGCACT 2245 Query 125409 TCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGT 125468 | | | | || ||| |||| |||||||||||||| || ||||||||||| || || Sbjct 2246 GACACTTTCCCTGAGAGATTGGTTGCATTCGCCGCCGTGGAAGGCATCTTCTTCTCTGGA 2305 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 || || |||||||||||||||||||| | || |||||||| || || ||| Sbjct 2306 AGCTTCTGTTCCATCTTTTGGCTCAAGAAGAGGGGCCTCATGCCTGGCCTCTGCTTCAGC 2365 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGC 125588 || ||||| || |||| |||||||| || || ||||||||| ||| |||| || Sbjct 2366 AATGAGTTGATCAGCAGAGATGAGGGCCTTCATTGCGACTTTGCCTGTCTCCTGTACAGC 2425 Query 125589 AACTATCTGCGTC--CCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCG 125646 || |||| ||| || |||| | || | | || | || | | | Sbjct 2426 ----ATGCTCGTCAACCG---GC-CTTCCACC---GACATGCCCACACAAATCATCAAGG 2474 Query 125647 ATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCA 125706 | || ||| ||| ||| | || ||| | | || || || || || || | ||||| | Sbjct 2475 AGGCTGTGGAGATTGAAAAGGAATTTGTCTCTGAGTCGCTTCCTGTTGGCCTCATTGGAA 2534 Query 125707 TGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACT-GTACGAG 125765 ||||| | ||| ||||| | ||||| || ||||||||||| | || || || Sbjct 2535 TGAACGCCGCGCTCATGTGTCAATACATTGAATTTGTGGCAGACAGACTTCTCGTCGCTC 2594 Query 125766 TTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCA 125825 ||| | || |||| | |||||| | || ||||| || ||| | || || Sbjct 2595 TTGGAT-GCTCCAAGGTCTACAACACGGCCAACCCCTTCCCTTGGATGGAAATGATTTCG 2653 Query 125826 CTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || |||| |||||||| || || |||| |||||| |||||||| Sbjct 2654 CTGCAGGGCAAGACCAATTTCTTTGAGAGGAAGGTGGGCGAGTAC 2698 >seq99766 Length=6639 Score = 187 bits (206), Expect = 4e-42 Identities = 581/885 (66%), Gaps = 27/885 (3%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 |||||||||||| | || || ||||||||| ||||||||||||||| |||||||||| Sbjct 887 CTGTTTCCCATCCGTTACCAACGCATTTGGGAGATGTACAAAAAGGCTGAGGCCTCCTTC 946 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||| | |||||||||||| ||| | || | || ||||| ||| | || Sbjct 947 TGGACAGCCGAAGAGGTCGACCTGGCTTCCGATCACAACCATTGGAGCTCTCTTACTTCT 1006 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || |||| | | || || | | |||||||||||||| | ||| ||||| || Sbjct 1007 GA---TGAGAGGCACTTCATTAAGTCTGTGTTGGCCTTCTTTGCTGCCTCTGATGGCATT 1063 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TG 125233 || | || || || || ||| |||| | ||||| |||| ||| || Sbjct 1064 GTGACTGAGAACTTGGCTGGGCGCTTCATGACAGAGATTCAGATTCCTGAGGC-TCGCTG 1122 Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||| ||||| || || || ||||||||| | |||||||||||||| || |||| Sbjct 1123 CTTCTACGGCTTTCAGATTGCCATTGAGAACATTCACTCGGAAATGTATTCCCTCTTGAT 1182 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAACA--CATGCTCTTTAACGCAATCGACACG 125351 |||| ||| | || || | || || ||| ||||| || || ||||| || Sbjct 1183 CGACACCTACGTGAAGGA-CCACGTCGAGAAGGATCAT-CTCTTCAATGCCATCGATACT 1240 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGAC---GACAAG 125408 ||||| ||| | || || ||| | |||| | ||||| || | | || Sbjct 1241 GTGCCTTCTGTCAAGAAGAAAGCTGATTGGGCTCTCAAATGGATTGAAAAGAGTGGCACT 1300 Query 125409 TCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGT 125468 | | | | || ||| |||| |||||||||||||| || ||||||||||| || || Sbjct 1301 GACACTTTCCCTGAGAGATTGGTTGCATTCGCCGCCGTGGAAGGCATCTTCTTCTCTGGA 1360 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 || || |||||||||||||||||||| | || |||||||| || || ||| Sbjct 1361 AGCTTCTGTTCCATCTTTTGGCTCAAGAAGAGGGGCCTCATGCCTGGCCTCTGCTTCAGC 1420 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGC 125588 || ||||| || |||| |||||||| || || ||||||||| ||| |||| || Sbjct 1421 AATGAGTTGATCAGCAGAGATGAGGGCCTTCATTGCGACTTTGCCTGTCTCCTGTACAGC 1480 Query 125589 AACTATCTGCGTC--CCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCG 125646 || |||| ||| || |||| | || | | || | || | | | Sbjct 1481 ----ATGCTCGTCAACCG---GC-CTTCCACC---GACATGCCCACACAAATCATCAAGG 1529 Query 125647 ATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCA 125706 | || ||| ||| ||| | || ||| | | || || || || || || | ||||| | Sbjct 1530 AGGCTGTGGAGATTGAAAAGGAATTTGTCTCTGAGTCGCTTCCTGTTGGCCTCATTGGAA 1589 Query 125707 TGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACT-GTACGAG 125765 ||||| | ||| ||||| | ||||| || ||||||||||| | || || || Sbjct 1590 TGAACGCCGCGCTCATGTGTCAATACATTGAATTTGTGGCAGACAGACTTCTCGTCGCTC 1649 Query 125766 TTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCA 125825 ||| | || |||| | |||||| | || ||||| || ||| | || || Sbjct 1650 TTGGAT-GCTCCAAGGTCTACAACACGGCCAACCCCTTCCCTTGGATGGAAATGATTTCG 1708 Query 125826 CTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || |||| |||||||| || || |||| |||||| |||||||| Sbjct 1709 CTGCAGGGCAAGACCAATTTCTTTGAGAGGAAGGTGGGCGAGTAC 1753 >seq99765 Length=6612 Score = 187 bits (206), Expect = 4e-42 Identities = 581/885 (66%), Gaps = 27/885 (3%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 |||||||||||| | || || ||||||||| ||||||||||||||| |||||||||| Sbjct 887 CTGTTTCCCATCCGTTACCAACGCATTTGGGAGATGTACAAAAAGGCTGAGGCCTCCTTC 946 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||| | |||||||||||| ||| | || | || ||||| ||| | || Sbjct 947 TGGACAGCCGAAGAGGTCGACCTGGCTTCCGATCACAACCATTGGAGCTCTCTTACTTCT 1006 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || |||| | | || || | | |||||||||||||| | ||| ||||| || Sbjct 1007 GA---TGAGAGGCACTTCATTAAGTCTGTGTTGGCCTTCTTTGCTGCCTCTGATGGCATT 1063 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TG 125233 || | || || || || ||| |||| | ||||| |||| ||| || Sbjct 1064 GTGACTGAGAACTTGGCTGGGCGCTTCATGACAGAGATTCAGATTCCTGAGGC-TCGCTG 1122 Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||| ||||| || || || ||||||||| | |||||||||||||| || |||| Sbjct 1123 CTTCTACGGCTTTCAGATTGCCATTGAGAACATTCACTCGGAAATGTATTCCCTCTTGAT 1182 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAACA--CATGCTCTTTAACGCAATCGACACG 125351 |||| ||| | || || | || || ||| ||||| || || ||||| || Sbjct 1183 CGACACCTACGTGAAGGA-CCACGTCGAGAAGGATCAT-CTCTTCAATGCCATCGATACT 1240 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGAC---GACAAG 125408 ||||| ||| | || || ||| | |||| | ||||| || | | || Sbjct 1241 GTGCCTTCTGTCAAGAAGAAAGCTGATTGGGCTCTCAAATGGATTGAAAAGAGTGGCACT 1300 Query 125409 TCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGT 125468 | | | | || ||| |||| |||||||||||||| || ||||||||||| || || Sbjct 1301 GACACTTTCCCTGAGAGATTGGTTGCATTCGCCGCCGTGGAAGGCATCTTCTTCTCTGGA 1360 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 || || |||||||||||||||||||| | || |||||||| || || ||| Sbjct 1361 AGCTTCTGTTCCATCTTTTGGCTCAAGAAGAGGGGCCTCATGCCTGGCCTCTGCTTCAGC 1420 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGC 125588 || ||||| || |||| |||||||| || || ||||||||| ||| |||| || Sbjct 1421 AATGAGTTGATCAGCAGAGATGAGGGCCTTCATTGCGACTTTGCCTGTCTCCTGTACAGC 1480 Query 125589 AACTATCTGCGTC--CCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCG 125646 || |||| ||| || |||| | || | | || | || | | | Sbjct 1481 ----ATGCTCGTCAACCG---GC-CTTCCACC---GACATGCCCACACAAATCATCAAGG 1529 Query 125647 ATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCA 125706 | || ||| ||| ||| | || ||| | | || || || || || || | ||||| | Sbjct 1530 AGGCTGTGGAGATTGAAAAGGAATTTGTCTCTGAGTCGCTTCCTGTTGGCCTCATTGGAA 1589 Query 125707 TGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACT-GTACGAG 125765 ||||| | ||| ||||| | ||||| || ||||||||||| | || || || Sbjct 1590 TGAACGCCGCGCTCATGTGTCAATACATTGAATTTGTGGCAGACAGACTTCTCGTCGCTC 1649 Query 125766 TTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCA 125825 ||| | || |||| | |||||| | || ||||| || ||| | || || Sbjct 1650 TTGGAT-GCTCCAAGGTCTACAACACGGCCAACCCCTTCCCTTGGATGGAAATGATTTCG 1708 Query 125826 CTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || |||| |||||||| || || |||| |||||| |||||||| Sbjct 1709 CTGCAGGGCAAGACCAATTTCTTTGAGAGGAAGGTGGGCGAGTAC 1753 >seq105396 Length=45554 Score = 125 bits (138), Expect = 1e-23 Identities = 336/510 (66%), Gaps = 8/510 (2%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||||| ||| || || | |||||||| || ||||||||| | |||| Sbjct 3563 ACCAACGGCACGTCCAACGGTCTCATTCCAATGCTGCGAGTGTACAATGACACAGCACGC 3504 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| || || || || || || || | || |||| |||| |||||| Sbjct 3503 TACGTAGATCAAGGTGGTGGCAAGAGGAAGGGAGCATTCGCAATCTATCTGGAGCCTTGG 3444 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||||||||| | ||||| ||| | ||| || || ||| ||| |||||| ||| Sbjct 3443 CACGCGGACATCTTTGAGTTTTTGGAGCTGAAAAAGAACCACGGCAAGGAAGAGCAGCGA 3384 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046 ||||| || | || |||| || ||||| || ||| |||||||| || | || | | Sbjct 3383 GCCAGAGATCTCTTCCATGCTCTGTGGGTACCCGATCTGTTCATGGAGAGAGTGGAGGCA 3324 Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106 || || ||||| || | || ||| | | |||| ||||| || ||||| Sbjct 3323 GGAGGAGACTGGTCACTGTTTTGTCCCAATGAGGCACCAGGTCTTCAAGACAAATGGGGA 3264 Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACG---A 97163 | || ||||||| |||||| ||| |||| |||||||| | ||||| Sbjct 3263 GCTGAATTTGAGGAGCTGTACACACGCTATGAGCGCGAGGGCCG---TGCAAGACGTGCT 3207 Query 97164 GTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCG 97223 || | || | ||| || ||| |||||| || || || ||||||| || || || Sbjct 3206 GTTAAGGCTCAAGAGCTTTGGTTTGCCATCTTGGAAGCCCAAATAGAGACCGGTACCCCT 3147 Query 97224 TACATTCTCTACAAGGATACCGTGAATCGC-AACAGCAACCAACGCCACTTGGGCACCAT 97282 || || |||||||||||| | || | ||| || |||||| | ||| | |||||||| Sbjct 3146 TATATGCTCTACAAGGAT-CACTGCAACGCGAAATCCAACCACCAGCACCTCGGCACCAT 3088 Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGT 97312 | | ||||| || ||||| |||||||| Sbjct 3087 TCAATGTTCCAACCTTTGCACTGAAATTGT 3058 >seq96527 Length=155711 Score = 120 bits (132), Expect = 4e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 |||||||| || || ||||| ||||||||||||||||| || || || ||||| | | Sbjct 54030 CTGGTGGCCTTTGCTGCCGTCGAGGGCATCTTCTTTTCTGGAAGCTTCTGTGCCATTTAT 53971 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 ||| |||||||||| || ||||||| || || || | | ||||||||||| | || Sbjct 53970 TGGATCAAGAAGCGAGGCATCATGCCTGGCCTCACCCTCTCCAACGAGTTTATCGCCAGA 53911 Query 125547 GACGAGGGCCTACACTGTGACTTTGCCAT 125575 || |||||||| |||||| | |||||||| Sbjct 53910 GATGAGGGCCTCCACTGTAAATTTGCCAT 53882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740061419366640