Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq107536 98.7 7e-16 seq95317 98.7 7e-16 seq95316 98.7 7e-16 seq106909 89.7 4e-13 seq107474 86.0 5e-12 >seq107536 Length=9870 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| ||||||| | | || || ||||| ||||| || || || |||||||| || Sbjct 5 TGCCTCCTCTCAGGCGCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCG 64 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | | |||| || | || ||||||||| | ||||||||||| || || || Sbjct 65 CCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGCTGATCAGGTG 124 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| || |||||||| ||| || ||| || | || || | ||| |||| Sbjct 125 GAATACCCTCTTTGTCTTGAATCTTCTGCTTGACGTTCTCAATAGAATCAGAGGACTCTA 184 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | |||||||||||| || |||| || || ||||| || ||||| Sbjct 185 CCTCAAGGGTAATGGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 233 >seq95317 Length=578 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| ||||||| | | || || ||||| ||||| || || || |||||||| || Sbjct 5 TGCCTCCTCTCAGGCGCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCG 64 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | | |||| || | || ||||||||| | ||||||||||| || || || Sbjct 65 CCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGCTGATCAGGTG 124 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| || |||||||| ||| || ||| || | || || | ||| |||| Sbjct 125 GAATACCCTCTTTGTCTTGAATCTTCTGCTTGACGTTCTCAATAGAATCAGAGGACTCTA 184 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | |||||||||||| || |||| || || ||||| || ||||| Sbjct 185 CCTCAAGGGTAATGGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 233 >seq95316 Length=972 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| ||||||| | | || || ||||| ||||| || || || |||||||| || Sbjct 379 TGCCTCCTCTCAGGCGCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCG 320 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | | |||| || | || ||||||||| | ||||||||||| || || || Sbjct 319 CCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGCTGATCAGGTG 260 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| || |||||||| ||| || ||| || | || || | ||| |||| Sbjct 259 GAATACCCTCTTTGTCTTGAATCTTCTGCTTGACGTTCTCAATAGAATCAGAGGACTCTA 200 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | |||||||||||| || |||| || || ||||| || ||||| Sbjct 199 CCTCAAGGGTAATGGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 151 >seq106909 Length=2620 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| || ||||| | | || || ||||| ||||| || || || |||||||| ||| Sbjct 2122 TGCCTCCCCTCAAACGAAGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 2181 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | | |||| || | || ||||||||| | ||||||||||| || || || Sbjct 2182 CGAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGCTGATCAGGTG 2241 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || || |||||||| || || ||| || | || || | ||| || | Sbjct 2242 GGATACCCTCTTTGTCCTGGATCTTCTGCTTGACGTTCTCAATAGAATCAGAGGACTCGA 2301 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | |||||||||||| || |||| || || || || |||||||| Sbjct 2302 CCTCCAGGGTAATGGTTTTGCCAGTCAATGTCTTGACGAAGATTTGCAT 2350 >seq107474 Length=3350 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||| |||||| | || | |||||| || || || ||||| |||||||| ||| Sbjct 2439 CCTCCTCGCAATCTGAGCACCAGATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGCC 2380 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | || || | || ||||| || | ||||||||||| ||||| ||| Sbjct 2379 AAGGTACGACCATCCTCGAGCTGCTTGCCTGCAAAGATCAAACGTTGCTGGTCAGGAGGA 2320 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || ||||| || || ||| ||| | || ||| | || ||| || Sbjct 2319 ATGCCCTCCTTGTCTTGGATCTTCTGCTTCACATTCTCGATGCTGTCAGAGGATTCGACC 2260 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | |||||||||||| || || || || ||||| ||||| ||||| Sbjct 2259 TCAAGGGTAATGGTTTTTCCAGTGAGGGTCTTTACGAAAATCTGCAT 2213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361703744048874