Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq99507 89.7 3e-13 >seq99507 Length=2862 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 ||||| || | || | |||||| || | |||||||||||||| || ||||| || | Sbjct 2555 CCGCCCCTCAGACGAAGCACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAGTCGGCT 2496 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || | | ||| || | ||||| ||| ||| || | |||||||||||| | || Sbjct 2495 AAGGTACGGCCGTCCTCGAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCAGGAGGA 2436 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 |||||||| || || ||| ||| || || | | ||| | ||| || || || Sbjct 2435 ATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCAATAGAGTCAGAGGATTCGACC 2376 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || ||||| || || || || |||||||| ||||| Sbjct 2375 TCAAGTGTAATAGTCTTTCCAGTGAGCGTCTTCACGAAAATCTGCAT 2329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318359120123172