Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq106909 91.5 1e-13 seq107536 86.0 4e-12 seq95317 86.0 4e-12 seq95316 86.0 4e-12 seq93816 84.2 2e-11 seq100005 82.4 5e-11 >seq106909 Length=2620 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||| | |||||| | ||||||||| || ||| ||| || || || ||||| || | Sbjct 1896 CCTCCACGCAATCTGAGCACCAAATGAAGGGTGGACTCCTTCTGGATGTTATAGTC-TGC 1954 Query 43955 AATTGA-CGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | || | || ||||| || || |||||||| ||||| |||||||| || |||| Sbjct 1955 AAGGGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAGATCAAACGTTGCTGATCAGGAGG 2014 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || ||||| || || || || || || | | | |||| | |||||| Sbjct 2015 GATGCCCTCTTTGTCCTGGATCTTCTGCTTCACGTTTTCGATGCTATCAGAGCTCTCCAC 2074 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || || || || || || ||||||||||| ||||||||| Sbjct 2075 CTCCAAAGTTATAGTCTTGCCAGTCAATGTCTTCACAAAGATTTGCATG 2123 >seq107536 Length=9870 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||||| | | ||||| || || ||| ||| || || || || || || Sbjct 7 CCTCCTCTCAGGCGCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGCC 66 Query 43955 A-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || || | || |||| || || || || || ||||| |||||||| || | || Sbjct 67 AGAGTGCGGC-CGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGCTGATCAGGTGG 125 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||| ||||| ||| ||| || || ||||| | ||| || ||| | | ||| || Sbjct 126 AATACCCTCTTTGTCTTGAATCTTCTGCTTGACGTTCTCAATAGAATCAGAGGACTCTAC 185 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | ||||| ||||| || || || ||||||||||| || |||||| Sbjct 186 CTCAAGGGTAATGGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCATG 234 >seq95317 Length=578 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||||| | | ||||| || || ||| ||| || || || || || || Sbjct 7 CCTCCTCTCAGGCGCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGCC 66 Query 43955 A-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || || | || |||| || || || || || ||||| |||||||| || | || Sbjct 67 AGAGTGCGGC-CGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGCTGATCAGGTGG 125 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||| ||||| ||| ||| || || ||||| | ||| || ||| | | ||| || Sbjct 126 AATACCCTCTTTGTCTTGAATCTTCTGCTTGACGTTCTCAATAGAATCAGAGGACTCTAC 185 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | ||||| ||||| || || || ||||||||||| || |||||| Sbjct 186 CTCAAGGGTAATGGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCATG 234 >seq95316 Length=972 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||||| | | ||||| || || ||| ||| || || || || || || Sbjct 377 CCTCCTCTCAGGCGCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGCC 318 Query 43955 A-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || || | || |||| || || || || || ||||| |||||||| || | || Sbjct 317 AGAGTGCGGC-CGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGCTGATCAGGTGG 259 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||| ||||| ||| ||| || || ||||| | ||| || ||| | | ||| || Sbjct 258 AATACCCTCTTTGTCTTGAATCTTCTGCTTGACGTTCTCAATAGAATCAGAGGACTCTAC 199 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | ||||| ||||| || || || ||||||||||| || |||||| Sbjct 198 CTCAAGGGTAATGGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCATG 150 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||| | ||||| | ||||| || || ||| ||| || || || || || || Sbjct 605 CCTCCACGCAATCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGCC 546 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | ||| |||| || | ||| || |||||||| ||||| ||||||||||| | || Sbjct 545 AGAGTACGACCATCTTCAAGTTGCTTGCCTGCAAAGATCAAACGTTGCTGGTCAGGCGGG 486 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||| || || || || || ||||| | ||| | || | |||||| Sbjct 485 ATGCCTTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCAATGCTGTCAGAGCTCTCCACC 426 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | ||||| || || || || || ||||||||||| ||||||||| Sbjct 425 TCCAAAGTAATGGTCTTGCCAGTCAATGTCTTCACAAAGATTTGCATG 378 >seq93816 Length=1867 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| || || ||| ||||||||||| || ||| || ||| |||| || Sbjct 254 ACCAAATGGAGAGTAGACTCCTTTTGAATATTGTAGTCGGCCAAGGTACGACCATCCTCA 313 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | || || ||||| || || | || || ||||| |||| | || || || || Sbjct 314 AGCTGCTTGCCTGCGAAGATGAGGCGCTGTTGGTCAGGAGGGATGCCCTCCTTGTCCTGG 373 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || ||||| || | ||| | ||| | | |||||| |||| ||||| ||||| Sbjct 374 ATCTTCTGTTTCACATTCTCAATGGAATCAGAGGACTCCACTTCGAGGGTAATAGTTTTG 433 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATGT 44123 ||||| | |||||| || || || ||||||| Sbjct 434 CCGGTCAGAGTCTTTACGAAGATCTGCATGT 464 >seq100005 Length=3171 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC-GTT 43953 || ||||||| | | |||||| || || ||| ||| || || || || || || | Sbjct 3164 CCGCCTCTCAGGCGAAGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCC 3105 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || || | || |||| ||||| |||||||| |||| ||||||||||| |||| Sbjct 3104 AAAGTGCGGC-CGTCCTCCAGCTGTTTACCTGCAAAGATCAGACGTTGCTGGTCAGGAGG 3046 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || || || || || || || || || | ||| || ||| | |||||| Sbjct 3045 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCAATAGAATCAGAGCTCTCCAC 2986 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | ||||| || || || || || |||||||| || ||||||||| Sbjct 2985 TTCAAGGGTAATAGTCTTGCCAGTCAATGTCTTCACGAAGATTTGCATG 2937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354311860605672