Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq105357 134 2e-27 seq106211 107 3e-19 >seq105357 Length=23429 Score = 134 bits (148), Expect = 2e-27 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || ||||||||||| |||||||||||||||||| | |||||||| | | ||| Sbjct 2949 CTTCGTGACAACATCCAAGGTATCACCAAGCCAGCTATCAGACGTCTGGCCAGGAGAGGT 3008 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || || ||| ||||||| || |||| || |||| | | || |||| | || Sbjct 3009 GGCGTAAAACGTATCTCTGGCATGATCTACGAGGAGACAAGAGGAGTGCTGAAAGTGTTT 3068 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| |||||| | ||||| || || || ||||| ||| | |||||||| Sbjct 3069 CTTGAGAACGTTATTCGAGATGCAGTCACTTACACAGAGCATGCTCGCAGAAAGACTGTT 3128 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || |||||||| |||| ||||| ||||| | ||||| || | | || |||||||| Sbjct 3129 ACAGCCATGGATGTCGTTTATGCTTTGAAGAGGCAAGGACGCACTCTGTACGGTTTTGG 3187 >seq106211 Length=19778 Score = 107 bits (118), Expect = 3e-19 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || ||||||||||||||||||||||| || ||| | ||||| || | | || Sbjct 6014 TCTCCGCGACAACATCCAAGGAATCACCAAGCCTGCCATCAGACGTCTCGCCAGAAGGGG 6073 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| ||||||||| | ||||| || | |||||||| | | | || | || | || Sbjct 6074 TGGTGTCAAGCGTATTTCTGGTATGATTTATGAAGAAACCAGAGGCGTGCTCAAAGTATT 6133 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | ||| |||||| | |||||| | |||||||| ||||| | | | ||||| || Sbjct 6134 CTTGGAGAACGTTATTCGAGATGCTGTAACATATACCGAACACGCAAGAAGGAAGACAGT 6193 Query 16633 CACCTCCATGGATATCGTCTATGC 16656 || ||||||| | || ||||| Sbjct 6194 GACTGCCATGGACGTGGTGTATGC 6217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78976716335802