Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq105818 131 2e-25 seq104739 131 2e-25 seq107536 104 2e-17 seq105589 96.9 3e-15 seq100005 96.9 3e-15 seq107474 95.1 1e-14 seq105140 95.1 1e-14 seq107649 89.7 5e-13 seq94522 84.2 2e-11 >seq105818 Length=6286 Score = 131 bits (144), Expect = 2e-25 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | |||||||| ||||| ||||| || | |||||| | || |||| || Sbjct 5716 ATGCAGATCTTTGTAAAGACATTGACTGGTAAGACCATCACCTTGGAGGTAGAGTCCTCT 5657 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| | || ||| | || || ||||||||| ||||| || || || || ||||| || Sbjct 5656 GACTCTATTGAGAACGTGAAGCAAAAGATTCAAGACAAGGAGGGCATCCCACCCGACCAG 5597 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-AC-GTCAGCGACTATA 26946 || | ||||| | || |||||| || ||||| || | | | | || | ||| |||||| Sbjct 5596 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGTACACTGGCAG--ACTATA 5539 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 |||||||||| || |||||| |||||||||| || ||||| | |||||| Sbjct 5538 ACATTCAAAAGGAGTCTACTCTCCATCTGGTACTCAGACTGCGTGGAGGA 5489 >seq104739 Length=6556 Score = 131 bits (144), Expect = 2e-25 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | |||||||| ||||| ||||| || | |||||| | || |||| || Sbjct 6169 ATGCAGATCTTTGTAAAGACATTGACTGGTAAGACCATCACCTTGGAGGTAGAGTCCTCT 6228 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| | || ||| | || || ||||||||| ||||| || || || || ||||| || Sbjct 6229 GACTCTATTGAGAACGTGAAGCAAAAGATTCAAGACAAGGAGGGCATCCCACCCGACCAG 6288 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-AC-GTCAGCGACTATA 26946 || | ||||| | || |||||| || ||||| || | | | | || | ||| |||||| Sbjct 6289 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGTACACTGGCAG--ACTATA 6346 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 |||||||||| || |||||| |||||||||| || ||||| | |||||| Sbjct 6347 ACATTCAAAAGGAGTCTACTCTCCATCTGGTACTCAGACTGCGTGGAGGA 6396 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 26763 AACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA 26822 |||| |||||| | || || || ||||| ||||| || | || ||| | ||| | || Sbjct 5251 AACACAATGCAGATCTTCGTGAAGACATTGACTGGCAAGACCATTACCCTTGAAGTGGAG 5310 Query 26823 TCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCC 26882 || || | ||||||| | || || ||||||||| ||||| || || || || || Sbjct 5311 TCCTCTGATAGCATCGAGAACGTGAAGCAAAAGATTCAAGACAAGGAGGGCATTCCCCCT 5370 Query 26883 GATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGAC 26942 || || || | | || | || ||||| || || || || | | | || |||| Sbjct 5371 GACCAGCAGCGTTTGATCTTCGCAGGCAAGCAGCTGGAGGACGGGCGTACACTCGCCGAC 5430 Query 26943 TATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||| ||||| |||||||| | ||| |||| || | ||| ||||||| Sbjct 5431 TATAACATCCAAAAGGAATCTACCCTTCATTTGGTGCTTCGCCTTCGAGGAGG 5483 >seq107536 Length=9870 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || ||||| ||||| || | ||||| | ||| | || || Sbjct 689 ATGCAGATCTTTGTGAAGACATTGACTGGCAAGACCATCACTTTGGAAGTCGAGTCCTCT 630 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||| ||||||| | ||||| || ||||| ||||| ||||| || ||||||||||| Sbjct 629 GACAGCATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAAGGCATCCCTCCCGATCAG 570 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | | ||||| ||||| || |||| | | | | ||||| ||| Sbjct 569 CAGCGGCTGATCTTTGCAGGCAAGCAACTTGAGGATGGCCGCACCTTGGCTGACTACAAC 510 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || |||||||| || || |||| ||||| || | ||||| || || Sbjct 509 ATCCAAAAAGAGTCCACCCTCCACCTGGTGCTTCGTCTTAGGGGTGG 463 >seq105589 Length=6046 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | || || || ||||| |||||||| | ||||| | ||| | ||||| Sbjct 5758 AATGCAAATCTTCGTCAAGACATTGACTGGAAAGACCATCACTTTGGAAGTCGAATCCTC 5817 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||| | |||||| | || || || ||||| || || ||||| || || || ||||| Sbjct 5818 TGACTCTATCGAGAACGTGAAGCAGAAGATCCAAGATAAGGAAGGCATCCCACCTGATCA 5877 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | ||||||| | ||||| || ||||| || | | | || ||||| || Sbjct 5878 GCAGCGTCTCATTTTTGCAGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCTGACTACAA 5937 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||||||| ||||| || |||| ||||||| Sbjct 5938 CATTCAAAAGGAATCCACCCTCCACTTGGTCCT 5970 >seq100005 Length=3171 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | || || || ||||| |||||||| | ||||| | ||| | ||||| Sbjct 2709 AATGCAAATCTTCGTCAAGACATTGACTGGAAAGACCATCACTTTGGAAGTCGAATCCTC 2768 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||| | |||||| | || || || ||||| || || ||||| || || || ||||| Sbjct 2769 TGACTCTATCGAGAACGTGAAGCAGAAGATCCAAGATAAGGAAGGCATCCCACCTGATCA 2828 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | ||||||| | ||||| || ||||| || | | | || ||||| || Sbjct 2829 GCAGCGTCTCATTTTTGCAGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCTGACTACAA 2888 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||||||| ||||| || |||| ||||||| Sbjct 2889 CATTCAAAAGGAATCCACCCTCCACTTGGTCCT 2921 >seq107474 Length=3350 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || ||||| || | || ||| | ||| | || Sbjct 1529 ATGCAGATCTTTGTGAAGACGTTGACTGGCAAGACTATTACCCTTGAAGTGGAGAGCTCT 1588 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||| ||| ||| | ||||| || ||||| ||||| || || || || || || ||| Sbjct 1589 GACAGCATTGAGAACGTCAAGCAGAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAA 1648 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || || || |||||||| || | | | | | | |||||| || Sbjct 1649 CAGCGCCTCATCTTCGCTGGTAAGCAACTCGAGGACGGTCGTACCTTGGCCGACTACAAT 1708 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||||| |||||| ||||| |||| || | ||||| || || Sbjct 1709 ATTCAAAAAGAGTCTACTCTCCATTTGGTGCTTCGCCTTAGGGGTGG 1755 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||| || || || ||||| || | |||||| | || | ||||| Sbjct 1984 AATGCAGATCTTTGTGAAGACTTTGACTGGCAAGACCATCACCCTTGAGGTCGAATCCTC 2043 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || |||| ||| | || || |||||||| |||||||| || || || || ||||| Sbjct 2044 TGATTCCATTGAGAACGTAAAGCAAAAGATCCAGGACAAAGAGGGCATCCCCCCTGATCA 2103 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | ||||| | || ||||| || || || |||| | | | | ||| || || Sbjct 2104 GCAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCTTGGCCGATTACAA 2163 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||| || |||||| | || |||| || | || || ||||| Sbjct 2164 CATTCAAAAGGAGTCTACTCTTCACTTGGTGCTTCGTCTCAGGGGAGG 2211 >seq105140 Length=834 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||||||||| | ||||| || | ||||| | ||| | || || Sbjct 230 ATGCAGATCTTTGTAAAAACTCTGACTGGCAAGACCATCACTTTGGAAGTGGAGTCTTCT 289 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||| ||||||| | || ||||| |||||| ||||| || || || ||||| ||||| Sbjct 290 GACAGCATCGAGAATGTGAAACAGAAGATTCAAGACAAGGAGGGCATCCCTCCTGATCAG 349 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | | || ||||| || || || | | | || |||||| ||| Sbjct 350 CAGCGTCTCATCTTTGCAGGTAAACAGCTTGAGGACGGCCGCACGCTCGCCGACTACAAC 409 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || |||||| | || |||| || | ||||| || || Sbjct 410 ATCCAAAAGGAGTCTACTCTTCACTTGGTGCTTCGCCTTAGGGGTGG 456 >seq107649 Length=18249 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||||||||| || ||||| || | |||||| | ||| | || || Sbjct 5827 ATGCAGATCTTTGTAAAAACTTTGACTGGCAAGACCATCACCTTGGAAGTGGAGTCCTCT 5886 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| | |||||| | ||||| || |||||| ||||| ||||| || || || || || Sbjct 5887 GACTCTATCGAGAACGTCAAGCAGAAGATTCAGGACAAGGAAGGCATCCCCCCTGACCAG 5946 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | | ||| || || ||||| || | | | | | |||||| ||| Sbjct 5947 CAGCGTCTGATCTTTGCCGGTAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 6006 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || || |||||| | || |||| || | || || ||||| Sbjct 6007 ATCCAGAAGGAGTCTACTCTTCACTTGGTGCTTCGCCTGAGGGGAGG 6053 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || || || || || | |||||| ||||| | || || Sbjct 6511 ATGCAGATCTTCGTTAAGACCTTGACCGGCAAGACCATCACCCTCGAAGTTGAGTCTTCT 6570 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || | ||||||| | || || || ||||| ||||| || || || ||||||||||| Sbjct 6571 GATAGCATCGAGAATGTGAAGCAGAAGATACAGGACAAGGAGGGCATTCCTCCCGATCAG 6630 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | || | || || || || ||||| || | | | | | |||||| ||| Sbjct 6631 CAGCGTTTGATCTTCGCTGGTAAGCAGCTCGAGGACGGTCGTACTCTTGCCGACTACAAC 6690 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || |||||| ||||| |||| || | || || ||||| Sbjct 6691 ATCCAAAAGGAGTCTACTCTCCATTTGGTGCTTCGCCTGAGGGGAGG 6737 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || || ||||| || | |||||| ||||| | || || Sbjct 6739 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCCTCGAAGTTGAGTCTTCT 6798 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || | || ||| | ||||| || |||||| ||||| || || || ||||||||||| Sbjct 6799 GATAGTATTGAGAACGTCAAGCAGAAGATTCAGGACAAGGAGGGCATTCCTCCCGATCAG 6858 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | || | || |||||| || ||||| || | | | | | ||||| ||| Sbjct 6859 CAGCGTTTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCTGACTACAAC 6918 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGA 26993 || ||||| || |||||| | || |||| || | || || ||| Sbjct 6919 ATCCAAAAGGAGTCTACTCTTCACTTGGTGCTTCGCCTCAGGGGA 6963 >seq94522 Length=3036 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||||||||| || ||||| || | |||||| | ||| | || || Sbjct 1015 ATGCAAATCTTTGTAAAAACTTTGACTGGCAAGACCATCACCTTGGAAGTGGAGTCCTCT 1074 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| | |||||| | || || || |||||| ||||| ||||| || || || || || Sbjct 1075 GACTCTATCGAGAACGTTAAGCAGAAGATTCAGGACAAGGAAGGCATCCCCCCTGACCAG 1134 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | | ||||| || || || || | | | | | |||||| ||| Sbjct 1135 CAGCGCCTCATCTTTGCAGGCAAGCAGCTTGAGGACGGTCGCACTTTGGCCGACTACAAC 1194 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAAA 26999 || ||||| || || || | || |||| || || | | |||||| || Sbjct 1195 ATCCAAAAGGAGTCCACCCTTCACTTGGTGCTCAGGTTGCGTGGAGGACAA 1245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478017916978080