Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq105396 260 4e-64 seq104633 87.8 5e-12 seq99766 87.8 5e-12 seq99765 87.8 5e-12 >seq105396 Length=45554 Score = 260 bits (288), Expect = 4e-64 Identities = 1052/1642 (64%), Gaps = 54/1642 (3%) Strand=Plus/Minus Query 363545 TATTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTT 363604 ||||||| || ||||| || ||| | | ||||||||| || | ||||| | |||| Sbjct 3766 TATTCACTCATGCCACTCCCACACTTTTCAATGCTGGCACGCCACGACCACAACTTTCTT 3707 Query 363605 CTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGA 363664 | ||||| || | || ||| | || || ||| || || || | ||||| ||||| Sbjct 3706 CGTGCTTCCTCGTTAACATGCAAGAAGACAGCATAGAAGGGATATACGACACGCTTAAAC 3647 Query 363665 ATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG 363724 | || || | ||||| |||| || || ||||||||| | | ||||| |||||| Sbjct 3646 AGTGCGCCTTGATTTCTAAGAGCGCCGGAGGAATTGGTCTTAGTGTGCACAAAATTCGTG 3587 Query 363725 CACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 | ||| ||||| | ||||| || || || || || |||| ||||| | Sbjct 3586 CTGCCAACTCGTACATCAGGGGCACCAACGGCACGTCCAACGGTCTCATTCCAATGCTGC 3527 Query 363785 GTGTGTTTGACAAT---ACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGG 363841 | |||| ||||| || || | ||||| || || ||||| || ||| | || || | Sbjct 3526 GAGTGT---ACAATGACACAGCACGCTACGTAGATCAAGGTGGTGGCAAGAGGAAGGGAG 3470 Query 363842 CGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGA 363901 | || || || ||||| |||||| || || || || ||||||||| | ||||| || Sbjct 3469 CATTCGCAATCTATCTGGAGCCTTGGCACGCGGACATCTTTGAGTTTTTGGAGCT---GA 3413 Query 363902 AAAA----CACGGGAA--AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGG 363955 |||| ||||| || ||||| | ||| || | ||||| ||| |||| || |||| Sbjct 3412 AAAAGAACCACGGCAAGGAAGAGCA---GCGAGCCAGAGATCTCTTCCATGCTCTGTGGG 3356 Query 363956 TTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGA-ATTGGTCACTCTTTTGCCCA 364014 | | || | || ||| || | ||||||||||| | || | |||||||| ||||| || Sbjct 3355 TACCCGATCTGTTCATGGAGAGAGTGGAGGCAGG-AGGAGACTGGTCACTGTTTTGTCCC 3297 Query 364015 CACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAG 364074 | || ||||||||| || |||||| | || | || | || ||| | Sbjct 3296 AATGAGGCACCAGGTCTTCAAGACAAATGGGGAGCTGAATTTGAGGAGCTGTACACACGC 3237 Query 364075 TATGAATCGGAGGGAAAGGCTCGTAAGA----CAATTCCCGCACAGAAGCTATGGTTTGC 364130 ||||| | | || | | | |||| | || || || |||| |||||||| Sbjct 3236 TATGA----GCGCGAGGGCCGTGCAAGACGTGCTGTTAAGGCTCAAGAGCTTTGGTTTGC 3181 Query 364131 CATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAA 364190 |||| |||| | || || ||||| || || || |||||| | ||||| ||| ||||| Sbjct 3180 CATCTTGGAAGCCCAAATAGAGACCGGTACCCCTTATATGCTCTACAAGGATCACTGCAA 3121 Query 364191 CCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGAT 364250 | || |||||||| |||||||| || || ||||| |||||| || || || || Sbjct 3120 CGCGAAATCCAACCACCAGCACCTCGGCACCATTCAATGTTCCAACCTTTGCACTGAAAT 3061 Query 364251 TATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCC 364310 | | | | ||| | ||| | || ||||||||||| || || || || || || || Sbjct 3060 TGTCCAGTTCACATCACCCAAAGAAGTGGCCGTATGTAATCTCGCTTCAATGGCTCTGCC 3001 Query 364311 GGCGTTTGT--------AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACC 364362 | ||| | || |||||| ||||| ||| || | || | ||| || | Sbjct 3000 TAAATATGTGGACAAAGAGAAAATGGTA--TTTGATCACGAGAAGCTCTTTGAGGTGGTC 2943 Query 364363 TATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAA 364422 | | || |||| | ||||||| || ||| || || || ||| || | ||| Sbjct 2942 AAGGTGGTCACGCGCAACTTGAACAAGGTAATAGACGTCAACTACTACCCAGTTGCAGAA 2883 Query 364423 GCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGAC 364482 ||||||| || || | ||||| | || ||||| ||||| |||||||| || |||||| Sbjct 2882 GCCGAGCACTCCAACAGACGTCACAGGCCTATTGGCCTTGGAGTACAGGGTCTTGCTGAC 2823 Query 364483 GTTT---TTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAG 364539 || | || | ||| | ||| | | || || || || | || || Sbjct 2822 GTCTTCCTTCTCTTGCGC---ATGCCTTGGGACAGCGAAGAGGCACGCGCCCTCAACCGC 2766 Query 364540 GAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAA-AAC 364598 || || || || ||||| ||||||||||| | || | || || ||||||| | Sbjct 2765 GACATTTTCGAGACAATCTATTTTGCCGCTCTCACATCATCCAACGAGCTGGCAAAGGAG 2706 Query 364599 CAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGA 364658 |||||| ||| | || | || || || || | || | | | |||||||| Sbjct 2705 CAAGGG-CCCTACCCCACATTTGCCGGCTCTCCAACGAGCAAAGGCATACTACAGTTTGA 2647 Query 364659 TCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTT-A 364717 | | |||||||| |||||| ||| ||| | |||| | || | | | || Sbjct 2646 TATGTGGAATGTTGAGCCATCCTCCCGTTGGGATTGGGCCTCCCTCAAGGCAAGCATTGT 2587 Query 364718 AGAAGCATGGTACTCGCAA---CTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTG 364774 |||| || ||| ||||| || || ||| || || ||||| |||||||||||| Sbjct 2586 AGAA-CACGGTCTGCGCAACAGCTTGCTGGTT---GCACCTATGCCGACGGCTTCTACTT 2531 Query 364775 CACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCC 364834 | ||||| || || ||||| |||||||| || || | || ||| | || || | | Sbjct 2530 CCCAGATACTAGGCAACAATGAGTGCTTTGAGCCTTACACTTCTAATATCTACACAAGGC 2471 Query 364835 GGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACC 364894 | | | | ||||| ||| |||| | || | || | ||| |||||| | | Sbjct 2470 GCATCTTGGCTGGAGACTTTACGGTGATCAACGAACACTTGCTCAGGGATCTGATGGCAC 2411 Query 364895 GCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGA 364954 || |||||| | | ||||||||| | | | || ||||| || ||||| Sbjct 2410 TGGGTCTGTGGAATCATGCAATGAAGAACAAGCTTGTTGCGCACAATGGATCCGTGCAAG 2351 Query 364955 ACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCA 365014 ||| | | ||| || || |||| | |||||||| || ||||| ||| | Sbjct 2350 CCATAGACGAGATCCCAAGCGAGCTCAAGCGCTTGTACAAAACAGTTTGGGAGATTCCTC 2291 Query 365015 TGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGT 365074 ||| | |||| | || ||||| || || || | || | ||| || |||||| Sbjct 2290 AGCGTATTCTCTTAGACATGGCAGCTGACCGAGCAGCGTACATCGACCAAAGCCAGAGCC 2231 Query 365075 TTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGT 365134 | ||||||| ||| | |||| | | ||||| || || || ||||| || |||| | Sbjct 2230 TAAACGTATATATGGCAGAGCCCTCATTCGCCAGACTCACGTCGATGCACTTTTACGCAT 2171 Query 365135 GGAAATCCGGTCTTAAGACAGG 365156 |||| || || ||||| || Sbjct 2170 GGAAGAAGGGCCTAAAGACTGG 2149 >seq104633 Length=6721 Score = 87.8 bits (96), Expect = 5e-12 Identities = 157/226 (69%), Gaps = 10/226 (4%) Strand=Plus/Plus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAAT----GAACGTTCA--TTCGCG 22488 ||||| || || |||||||| || |||||||| | || | || || ||| | Sbjct 2198 AAGAAGAAAGCTGATTGGGCTCTCAAATGGATTGAAAAGAGTGGCACTGACACTTTCCCT 2257 Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 || | | ||||||| || | || |||||||| ||||| |||||| || ||| | Sbjct 2258 GAGAGATTGGTTGCATTCGCCGCCGTGGAAGGCATCTTCTTCTCTGGAAGCTTCTGTTCC 2317 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCA--AATGAGTTAA 22606 ||||||||||| || || | | | ||||| || || | |||| |||||||| | Sbjct 2318 ATCTTTTGGCTCAAGAAGAGGGGCCTCATGCCTGGCCT--CTGCTTCAGCAATGAGTTGA 2375 Query 22607 TTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATA 22652 | ||| |||||||||| |||||| ||| ||||| ||| | || || Sbjct 2376 TCAGCAGAGATGAGGGCCTTCATTGCGACTTTGCCTGTCTCCTGTA 2421 >seq99766 Length=6639 Score = 87.8 bits (96), Expect = 5e-12 Identities = 157/226 (69%), Gaps = 10/226 (4%) Strand=Plus/Plus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAAT----GAACGTTCA--TTCGCG 22488 ||||| || || |||||||| || |||||||| | || | || || ||| | Sbjct 1253 AAGAAGAAAGCTGATTGGGCTCTCAAATGGATTGAAAAGAGTGGCACTGACACTTTCCCT 1312 Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 || | | ||||||| || | || |||||||| ||||| |||||| || ||| | Sbjct 1313 GAGAGATTGGTTGCATTCGCCGCCGTGGAAGGCATCTTCTTCTCTGGAAGCTTCTGTTCC 1372 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCA--AATGAGTTAA 22606 ||||||||||| || || | | | ||||| || || | |||| |||||||| | Sbjct 1373 ATCTTTTGGCTCAAGAAGAGGGGCCTCATGCCTGGCCT--CTGCTTCAGCAATGAGTTGA 1430 Query 22607 TTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATA 22652 | ||| |||||||||| |||||| ||| ||||| ||| | || || Sbjct 1431 TCAGCAGAGATGAGGGCCTTCATTGCGACTTTGCCTGTCTCCTGTA 1476 >seq99765 Length=6612 Score = 87.8 bits (96), Expect = 5e-12 Identities = 157/226 (69%), Gaps = 10/226 (4%) Strand=Plus/Plus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAAT----GAACGTTCA--TTCGCG 22488 ||||| || || |||||||| || |||||||| | || | || || ||| | Sbjct 1253 AAGAAGAAAGCTGATTGGGCTCTCAAATGGATTGAAAAGAGTGGCACTGACACTTTCCCT 1312 Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 || | | ||||||| || | || |||||||| ||||| |||||| || ||| | Sbjct 1313 GAGAGATTGGTTGCATTCGCCGCCGTGGAAGGCATCTTCTTCTCTGGAAGCTTCTGTTCC 1372 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCA--AATGAGTTAA 22606 ||||||||||| || || | | | ||||| || || | |||| |||||||| | Sbjct 1373 ATCTTTTGGCTCAAGAAGAGGGGCCTCATGCCTGGCCT--CTGCTTCAGCAATGAGTTGA 1430 Query 22607 TTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATA 22652 | ||| |||||||||| |||||| ||| ||||| ||| | || || Sbjct 1431 TCAGCAGAGATGAGGGCCTTCATTGCGACTTTGCCTGTCTCCTGTA 1476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1301554860432348