Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq107474 105 6e-18 seq99508 100 2e-16 seq99507 100 2e-16 seq99506 100 2e-16 seq105140 89.7 4e-13 seq106677 82.4 6e-11 seq105818 82.4 6e-11 seq104739 82.4 6e-11 seq95946 82.4 6e-11 >seq107474 Length=3350 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| || || || ||||| ||||||||||||||| | || || ||| Sbjct 2213 ATGCAGATTTTCGTAAAGACCCTCACTGGAAAAACCATTACCCTTGAGGTCGAATCCTCT 2272 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 |||| | | | || || || || || || || || ||| | || ||| ||| Sbjct 2273 GACAGCATCGAGAATGTGAAGCAGAAGATCCAAGACAAGGAGGGCATTCCTCCTGACCAG 2332 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | ||| ||||| || | || |||| ||| ||||||| || ||| Sbjct 2333 CAACGTTTGATCTTTGCAGGCAAGCAGCTCGAGGATGGTCGTACCTTGGCCGACTACAAC 2392 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 || ||||| ||||||||| | ||| ||||| | ||||||||||||||| Sbjct 2393 ATCCAAAAGGAGTCTACTCTTCATCTGGTGCTCAGATTGCGAGGAGGA 2440 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| || ||||| || || | || || || ||||| ||| | || || ||| Sbjct 1984 AATGCAGATCTTTGTGAAGACTTTGACTGGCAAGACCATCACCCTTGAGGTCGAATCCTC 2043 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || | ||| | ||||| ||||| || || ||||| ||| ||||| |||||| Sbjct 2044 TGATTCCATTGAGAACGTAAAGCAAAAGATCCAGGACAAAGAGGGCATCCCCCCTGATCA 2103 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | || || | || ||||| || | || |||| | ||| |||||||||| || Sbjct 2104 GCAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCTTGGCCGATTACAA 2163 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||||||| ||||||||| | || ||||| Sbjct 2164 CATTCAAAAGGAGTCTACTCTTCACTTGGTG 2194 >seq99508 Length=2583 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || || || || || || || || || |||||| | ||| ||||||| Sbjct 2101 ATGCAGATCTTCGTGAAGACACTGACTGGCAAGACTATTACCCTTGAAGTGGAGTCCTCT 2160 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | ||||| || || ||| || || |||||| | || ||||||| Sbjct 2161 GATTCTATTGAGAACGTAAAGCAGAAGATTCAAGACAAGGAAGGCATTCCTCCTGATCAG 2220 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | || || | ||| ||||| || ||||||||| | ||| ||||||| || ||| Sbjct 2221 CAGCGCCTGATCTTTGCAGGCAAGCAGCTAGAAGATGGCCGTACCTTGGCCGACTACAAC 2280 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTG 115495 || ||||||||||| || | || ||||| Sbjct 2281 ATCCAAAAAGAGTCCACCCTTCACCTGGTG 2310 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| || || |||||||| ||||| || ||||| | || || ||| Sbjct 2329 ATGCAGATTTTCGTGAAGACGCTCACTGGAAAGACTATTACACTTGAGGTCGAATCCTCT 2388 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||| || ||| | || || || || || || || |||||| |||| ||||||| Sbjct 2389 GACTCTATTGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATCCCTCCTGATCAG 2448 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | ||| ||||| || | || |||| | ||| |||||||||| ||| Sbjct 2449 CAACGTTTGATCTTTGCAGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGATTACAAC 2508 Query 115466 ATTCAAAAAGAGTCTAC 115482 |||||||| ||||| || Sbjct 2509 ATTCAAAAGGAGTCCAC 2525 >seq99507 Length=2862 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || || || || || || || || || |||||| | ||| ||||||| Sbjct 2101 ATGCAGATCTTCGTGAAGACACTGACTGGCAAGACTATTACCCTTGAAGTGGAGTCCTCT 2160 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | ||||| || || ||| || || |||||| | || ||||||| Sbjct 2161 GATTCTATTGAGAACGTAAAGCAGAAGATTCAAGACAAGGAAGGCATTCCTCCTGATCAG 2220 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | || || | ||| ||||| || ||||||||| | ||| ||||||| || ||| Sbjct 2221 CAGCGCCTGATCTTTGCAGGCAAGCAGCTAGAAGATGGCCGTACCTTGGCCGACTACAAC 2280 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTG 115495 || ||||||||||| || | || ||||| Sbjct 2281 ATCCAAAAAGAGTCCACCCTTCACCTGGTG 2310 >seq99506 Length=3388 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || || || || || || || || || |||||| | ||| ||||||| Sbjct 335 ATGCAGATCTTCGTGAAGACACTGACTGGCAAGACTATTACCCTTGAAGTGGAGTCCTCT 276 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | ||||| || || ||| || || |||||| | || ||||||| Sbjct 275 GATTCTATTGAGAACGTAAAGCAGAAGATTCAAGACAAGGAAGGCATTCCTCCTGATCAG 216 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | || || | ||| ||||| || ||||||||| | ||| ||||||| || ||| Sbjct 215 CAGCGCCTGATCTTTGCAGGCAAGCAGCTAGAAGATGGCCGTACCTTGGCCGACTACAAC 156 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTG 115495 || ||||||||||| || | || ||||| Sbjct 155 ATCCAAAAAGAGTCCACCCTTCACCTGGTG 126 >seq105140 Length=834 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| || || | || || || ||||| ||| | || ||||||| Sbjct 2 ATGCAAATCTTTGTGAAGACATTGACTGGCAAGACCATCACCTTGGAGGTGGAGTCCTCT 61 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||| || ||| | || || || || || || ||||| ||| |||| ||||||| Sbjct 62 GACTCTATTGAGAACGTGAAGCAGAAGATCCAGGACAAAGAGGGCATCCCTCCTGATCAG 121 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | || || | ||| || || || | || |||| ||| ||||||| || ||| Sbjct 122 CAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGTACCTTGGCCGACTACAAC 181 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || ||||||||||||||| | || |||| | | ||| | ||||| Sbjct 182 ATCCAAAAAGAGTCTACTCTCCACTTGGTCCTTCGCTTGAGGGGAGG 228 >seq106677 Length=2796 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || || || || | || || || ||||||||| | || |||| | Sbjct 176 ATGCAGATCTTCGTGAAGACATTGACTGGCAAGACCATTACCCTTGAGGTGGAGAGCTCT 235 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||| || ||| | || || || || || || || || ||| | || ||||||| Sbjct 236 GACTCTATTGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCTCCTGATCAG 295 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | | || | ||| || || || | || |||| | ||| |||| || || ||| Sbjct 296 CAGCGTTTGATCTTTGCAGGAAAGCAGCTCGAGGATGGCCGTACCTTGGCTGACTACAAC 355 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 || ||||| ||||||||| | ||| ||||| | |||||||||||||| Sbjct 356 ATCCAAAAGGAGTCTACTCTTCATCTGGTGCTCCGATTGCGAGGAGGA 403 >seq105818 Length=6286 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| || || | || || || ||||| ||| | || |||||| Sbjct 5716 ATGCAGATCTTTGTAAAGACATTGACTGGTAAGACCATCACCTTGGAGGTAGAGTCCTCT 5657 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||| || ||| | || || ||||| ||| || || || ||| |||| || ||| Sbjct 5656 GACTCTATTGAGAACGTGAAGCAAAAGATTCAAGACAAGGAGGGCATCCCACCCGACCAG 5597 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | || || | || ||||| || | || || | || |||| || |||||| Sbjct 5596 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGTACACTGGCAGACTATAAC 5537 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 |||||||| ||||||||| | ||| |||| | ||| |||| |||||| Sbjct 5536 ATTCAAAAGGAGTCTACTCTCCATCTGGTACTCAGACTGCGTGGAGGA 5489 >seq104739 Length=6556 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| || || | || || || ||||| ||| | || |||||| Sbjct 6169 ATGCAGATCTTTGTAAAGACATTGACTGGTAAGACCATCACCTTGGAGGTAGAGTCCTCT 6228 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||| || ||| | || || ||||| ||| || || || ||| |||| || ||| Sbjct 6229 GACTCTATTGAGAACGTGAAGCAAAAGATTCAAGACAAGGAGGGCATCCCACCCGACCAG 6288 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | || || | || ||||| || | || || | || |||| || |||||| Sbjct 6289 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGTACACTGGCAGACTATAAC 6348 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 |||||||| ||||||||| | ||| |||| | ||| |||| |||||| Sbjct 6349 ATTCAAAAGGAGTCTACTCTCCATCTGGTACTCAGACTGCGTGGAGGA 6396 >seq95946 Length=1196 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 115399 TGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGA 115458 ||| |||||| | | || | ||| ||||| || | || |||| ||| ||||||| Sbjct 85 TGACCAGCAACGTTTGATCTTTGCAGGCAAGCAGCTCGAGGATGGTCGTACCTTGGCCGA 144 Query 115459 TTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 || ||||| ||||| ||||||||| | ||| ||||| | ||||||||||||||| Sbjct 145 CTACAACATCCAAAAGGAGTCTACTCTTCATCTGGTGCTCAGATTGCGAGGAGGA 199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424785623549680