Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq104633 192 7e-44 seq99766 192 7e-44 seq99765 192 7e-44 >seq104633 Length=6721 Score = 192 bits (212), Expect = 7e-44 Identities = 413/614 (67%), Gaps = 5/614 (1%) Strand=Plus/Minus Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGAT-ATCAACTCATTG 93139 |||||| | || ||||||||| ||| | || || |||| || | |||||||||||| Sbjct 2423 TGTACAGGAGACAGGCAAAGTCGCAATGAAGGCCCTCATCTC-TGCTGATCAACTCATTG 2365 Query 93140 CTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA 93199 ||||| | || || | || || | |||||||||||||| || ||| || || Sbjct 2364 CTGAAGCAGAGGCCAGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTT 2305 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG 93259 ||||| || || || ||||||||||| || ||||| || | | || | ||| | | Sbjct 2304 CCAGAGAAGAAGATGCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCA 2245 Query 93260 GAATTACTGCTG---ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGT 93316 | ||| | |||||||| | ||||||||| ||||| ||||| | | |||| | Sbjct 2244 GTGCCACTCTTTTCAATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACA 2185 Query 93317 GTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATT 93376 || ||||| || || || || | ||| |||| | || | ||| || ||||| Sbjct 2184 GTATCGATGGCATTGAAGAGATGATCCTTCTCGACGTGGTCCTTCACGTAGGTGTCGATC 2125 Query 93377 AACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACAT 93436 || || ||||||||||| || || | ||||| || ||||| || || |||||||| || Sbjct 2124 AAGAGGGAATACATTTCCGAGTGAATGTTCTCAATGGCAATCTGAAAGCCGTAGAAGCAG 2065 Query 93437 CTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATA 93496 | ||| || | ||||| | ||| || | | | | | || ||| | || || Sbjct 2064 CGAGCCTCAGGAATCTGAATCTCTGTCATGAAGCGCCCAGCCAAGTTCTCAGTCACAATG 2005 Query 93497 CCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTA 93556 ||||| || || ||||| || ||||| | | ||| || || || |||||||| || Sbjct 2004 CCATCAGAGGCAGCAAAGAAGGCCAACACAGACTTAATGAAGTGCCTCTCATCAGAAGTA 1945 Query 93557 AGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGAT 93616 || ||||| | |||| | || ||||| |||||| | ||||| || || Sbjct 1944 AGAGAGCTCCAATGGTTGTGATCGGAAGCCAGGTCGACCTCTTCGGCTGTCCAGAAGGAG 1885 Query 93617 GCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAA 93676 || || || ||||||||||| ||||| ||| ||| || | || ||||| | ||||| Sbjct 1884 GCCTCAGCCTTTTTGTACATCTCCCAAATGCGTTGGTAACGGATGGGAAACAGCACAAAG 1825 Query 93677 CGATTAGGGTTATC 93690 || || || || || Sbjct 1824 CGGTTTGGATTCTC 1811 >seq99766 Length=6639 Score = 192 bits (212), Expect = 7e-44 Identities = 413/614 (67%), Gaps = 5/614 (1%) Strand=Plus/Minus Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGAT-ATCAACTCATTG 93139 |||||| | || ||||||||| ||| | || || |||| || | |||||||||||| Sbjct 1478 TGTACAGGAGACAGGCAAAGTCGCAATGAAGGCCCTCATCTC-TGCTGATCAACTCATTG 1420 Query 93140 CTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA 93199 ||||| | || || | || || | |||||||||||||| || ||| || || Sbjct 1419 CTGAAGCAGAGGCCAGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTT 1360 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG 93259 ||||| || || || ||||||||||| || ||||| || | | || | ||| | | Sbjct 1359 CCAGAGAAGAAGATGCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCA 1300 Query 93260 GAATTACTGCTG---ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGT 93316 | ||| | |||||||| | ||||||||| ||||| ||||| | | |||| | Sbjct 1299 GTGCCACTCTTTTCAATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACA 1240 Query 93317 GTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATT 93376 || ||||| || || || || | ||| |||| | || | ||| || ||||| Sbjct 1239 GTATCGATGGCATTGAAGAGATGATCCTTCTCGACGTGGTCCTTCACGTAGGTGTCGATC 1180 Query 93377 AACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACAT 93436 || || ||||||||||| || || | ||||| || ||||| || || |||||||| || Sbjct 1179 AAGAGGGAATACATTTCCGAGTGAATGTTCTCAATGGCAATCTGAAAGCCGTAGAAGCAG 1120 Query 93437 CTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATA 93496 | ||| || | ||||| | ||| || | | | | | || ||| | || || Sbjct 1119 CGAGCCTCAGGAATCTGAATCTCTGTCATGAAGCGCCCAGCCAAGTTCTCAGTCACAATG 1060 Query 93497 CCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTA 93556 ||||| || || ||||| || ||||| | | ||| || || || |||||||| || Sbjct 1059 CCATCAGAGGCAGCAAAGAAGGCCAACACAGACTTAATGAAGTGCCTCTCATCAGAAGTA 1000 Query 93557 AGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGAT 93616 || ||||| | |||| | || ||||| |||||| | ||||| || || Sbjct 999 AGAGAGCTCCAATGGTTGTGATCGGAAGCCAGGTCGACCTCTTCGGCTGTCCAGAAGGAG 940 Query 93617 GCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAA 93676 || || || ||||||||||| ||||| ||| ||| || | || ||||| | ||||| Sbjct 939 GCCTCAGCCTTTTTGTACATCTCCCAAATGCGTTGGTAACGGATGGGAAACAGCACAAAG 880 Query 93677 CGATTAGGGTTATC 93690 || || || || || Sbjct 879 CGGTTTGGATTCTC 866 >seq99765 Length=6612 Score = 192 bits (212), Expect = 7e-44 Identities = 413/614 (67%), Gaps = 5/614 (1%) Strand=Plus/Minus Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGAT-ATCAACTCATTG 93139 |||||| | || ||||||||| ||| | || || |||| || | |||||||||||| Sbjct 1478 TGTACAGGAGACAGGCAAAGTCGCAATGAAGGCCCTCATCTC-TGCTGATCAACTCATTG 1420 Query 93140 CTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA 93199 ||||| | || || | || || | |||||||||||||| || ||| || || Sbjct 1419 CTGAAGCAGAGGCCAGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTT 1360 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG 93259 ||||| || || || ||||||||||| || ||||| || | | || | ||| | | Sbjct 1359 CCAGAGAAGAAGATGCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCA 1300 Query 93260 GAATTACTGCTG---ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGT 93316 | ||| | |||||||| | ||||||||| ||||| ||||| | | |||| | Sbjct 1299 GTGCCACTCTTTTCAATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACA 1240 Query 93317 GTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATT 93376 || ||||| || || || || | ||| |||| | || | ||| || ||||| Sbjct 1239 GTATCGATGGCATTGAAGAGATGATCCTTCTCGACGTGGTCCTTCACGTAGGTGTCGATC 1180 Query 93377 AACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACAT 93436 || || ||||||||||| || || | ||||| || ||||| || || |||||||| || Sbjct 1179 AAGAGGGAATACATTTCCGAGTGAATGTTCTCAATGGCAATCTGAAAGCCGTAGAAGCAG 1120 Query 93437 CTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATA 93496 | ||| || | ||||| | ||| || | | | | | || ||| | || || Sbjct 1119 CGAGCCTCAGGAATCTGAATCTCTGTCATGAAGCGCCCAGCCAAGTTCTCAGTCACAATG 1060 Query 93497 CCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTA 93556 ||||| || || ||||| || ||||| | | ||| || || || |||||||| || Sbjct 1059 CCATCAGAGGCAGCAAAGAAGGCCAACACAGACTTAATGAAGTGCCTCTCATCAGAAGTA 1000 Query 93557 AGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGAT 93616 || ||||| | |||| | || ||||| |||||| | ||||| || || Sbjct 999 AGAGAGCTCCAATGGTTGTGATCGGAAGCCAGGTCGACCTCTTCGGCTGTCCAGAAGGAG 940 Query 93617 GCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAA 93676 || || || ||||||||||| ||||| ||| ||| || | || ||||| | ||||| Sbjct 939 GCCTCAGCCTTTTTGTACATCTCCCAAATGCGTTGGTAACGGATGGGAAACAGCACAAAG 880 Query 93677 CGATTAGGGTTATC 93690 || || || || || Sbjct 879 CGGTTTGGATTCTC 866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556111028697360