Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq104633 105 1e-17 seq99766 105 1e-17 seq99765 105 1e-17 seq96527 87.8 4e-12 >seq104633 Length=6721 Score = 105 bits (116), Expect = 1e-17 Identities = 267/401 (67%), Gaps = 4/401 (1%) Strand=Plus/Plus Query 243318 CGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGG 243377 ||| ||||| || | || || || || ||||| ||||||||||||| ||| | || Sbjct 2281 CGTGGAAGGCATCTTCTTCTCTGGAAGCTTCTGTTCCATCTTTTGGCTCAAGAAGAGGGG 2340 Query 243378 TGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCA 243437 | |||||||||||| | | || ||||| ||||| | || ||||||||||| Sbjct 2341 CCTCATGCCTGGCCTCTGCTTCAGCAATGAGTTGATCAGCAGAGATGAGGGCCTTCATTG 2400 Query 243438 ACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAGC-TACCATTCGAAACGGTCA 243496 | || | || |||| | |||| ||| || | ||| ||| | | || Sbjct 2401 CGACTTTGCCTGTCTCCTGTACAGCATGCTCGTCAACCGGCCTTCCAC-CGACATGCCCA 2459 Query 243497 AACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCAT 243556 ||||||||||| || || || || | ||||||||||| | | || | |||| | Sbjct 2460 CACAAATCATCAAGGAGGCTGTGGAGATTGAAAAGGAATTTGTCTCTGAGTCGCTTCC-T 2518 Query 243557 GCCGG-CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGAC 243615 | || || ||||| |||||| | | |||||| | || ||||| ||||| || || ||| Sbjct 2519 GTTGGCCTCATTGGAATGAACGCCGCGCTCATGTGTCAATACATTGAATTTGTGGCAGAC 2578 Query 243616 CGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTT 243675 | || || |||| ||||| | || || |||||| | |||||||| | | Sbjct 2579 AGACTTCTCGTCGCTCTTGGATGCTCCAAGGTCTACAACACGGCCAACCCCTTCCCTTGG 2638 Query 243676 ATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGA 243716 ||||| | |||||||| || || || || || ||||| || Sbjct 2639 ATGGAAATGATTTCGCTGCAGGGCAAGACCAATTTCTTTGA 2679 >seq99766 Length=6639 Score = 105 bits (116), Expect = 1e-17 Identities = 267/401 (67%), Gaps = 4/401 (1%) Strand=Plus/Plus Query 243318 CGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGG 243377 ||| ||||| || | || || || || ||||| ||||||||||||| ||| | || Sbjct 1336 CGTGGAAGGCATCTTCTTCTCTGGAAGCTTCTGTTCCATCTTTTGGCTCAAGAAGAGGGG 1395 Query 243378 TGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCA 243437 | |||||||||||| | | || ||||| ||||| | || ||||||||||| Sbjct 1396 CCTCATGCCTGGCCTCTGCTTCAGCAATGAGTTGATCAGCAGAGATGAGGGCCTTCATTG 1455 Query 243438 ACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAGC-TACCATTCGAAACGGTCA 243496 | || | || |||| | |||| ||| || | ||| ||| | | || Sbjct 1456 CGACTTTGCCTGTCTCCTGTACAGCATGCTCGTCAACCGGCCTTCCAC-CGACATGCCCA 1514 Query 243497 AACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCAT 243556 ||||||||||| || || || || | ||||||||||| | | || | |||| | Sbjct 1515 CACAAATCATCAAGGAGGCTGTGGAGATTGAAAAGGAATTTGTCTCTGAGTCGCTTCC-T 1573 Query 243557 GCCGG-CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGAC 243615 | || || ||||| |||||| | | |||||| | || ||||| ||||| || || ||| Sbjct 1574 GTTGGCCTCATTGGAATGAACGCCGCGCTCATGTGTCAATACATTGAATTTGTGGCAGAC 1633 Query 243616 CGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTT 243675 | || || |||| ||||| | || || |||||| | |||||||| | | Sbjct 1634 AGACTTCTCGTCGCTCTTGGATGCTCCAAGGTCTACAACACGGCCAACCCCTTCCCTTGG 1693 Query 243676 ATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGA 243716 ||||| | |||||||| || || || || || ||||| || Sbjct 1694 ATGGAAATGATTTCGCTGCAGGGCAAGACCAATTTCTTTGA 1734 >seq99765 Length=6612 Score = 105 bits (116), Expect = 1e-17 Identities = 267/401 (67%), Gaps = 4/401 (1%) Strand=Plus/Plus Query 243318 CGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGG 243377 ||| ||||| || | || || || || ||||| ||||||||||||| ||| | || Sbjct 1336 CGTGGAAGGCATCTTCTTCTCTGGAAGCTTCTGTTCCATCTTTTGGCTCAAGAAGAGGGG 1395 Query 243378 TGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCA 243437 | |||||||||||| | | || ||||| ||||| | || ||||||||||| Sbjct 1396 CCTCATGCCTGGCCTCTGCTTCAGCAATGAGTTGATCAGCAGAGATGAGGGCCTTCATTG 1455 Query 243438 ACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAGC-TACCATTCGAAACGGTCA 243496 | || | || |||| | |||| ||| || | ||| ||| | | || Sbjct 1456 CGACTTTGCCTGTCTCCTGTACAGCATGCTCGTCAACCGGCCTTCCAC-CGACATGCCCA 1514 Query 243497 AACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCAT 243556 ||||||||||| || || || || | ||||||||||| | | || | |||| | Sbjct 1515 CACAAATCATCAAGGAGGCTGTGGAGATTGAAAAGGAATTTGTCTCTGAGTCGCTTCC-T 1573 Query 243557 GCCGG-CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGAC 243615 | || || ||||| |||||| | | |||||| | || ||||| ||||| || || ||| Sbjct 1574 GTTGGCCTCATTGGAATGAACGCCGCGCTCATGTGTCAATACATTGAATTTGTGGCAGAC 1633 Query 243616 CGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTT 243675 | || || |||| ||||| | || || |||||| | |||||||| | | Sbjct 1634 AGACTTCTCGTCGCTCTTGGATGCTCCAAGGTCTACAACACGGCCAACCCCTTCCCTTGG 1693 Query 243676 ATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGA 243716 ||||| | |||||||| || || || || || ||||| || Sbjct 1694 ATGGAAATGATTTCGCTGCAGGGCAAGACCAATTTCTTTGA 1734 >seq96527 Length=155711 Score = 87.8 bits (96), Expect = 4e-12 Identities = 135/190 (71%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 243495 CAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTC--ATTTGCGACGCTATT 243552 || ||||||||||| ||||| ||||||| ||||| || || || || | |||| Sbjct 75726 CACACAAATCATCAAGGAAGCTGTTGAAATTGAAAAAGAGTTTGTATATGAGTCGCT--- 75782 Query 243553 CCATGCCGGCTT-ATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGC 243611 || || ||| |||||||||||| |||| |||||| | || ||||||||||| || || Sbjct 75783 CCCTGTTGGCCACATTGGCATGAACGCTGAGCTCATGTGTCAATACATCGAATTTGTGGC 75842 Query 243612 CGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGC 243671 ||| | || || ||| ||| |||| | || || ||| || | ||||| ||| | Sbjct 75843 AGACAGACTTCTCGTCGAGCTGGGTTGTTCCAAGGTATACCACACAGCCAACCCATTTCC 75902 Query 243672 CTTTATGGAG 243681 | |||||| Sbjct 75903 TTGGATGGAG 75912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1101357931165900