Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq105396 215 6e-51 >seq105396 Length=45554 Score = 215 bits (238), Expect = 6e-51 Identities = 925/1440 (64%), Gaps = 53/1440 (4%) Strand=Plus/Plus Query 113914 AAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTC 113973 ||| || || || | | |||| || |||||||| | ||||| |||||||||||||| Sbjct 2451 AAAGTCTCCAGCCAAGATGCGCCTTGTGTAGATATTAGAAGTGTAAGGCTCAAAGCACTC 2510 Query 113974 ATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033 |||||| || | || |||| || || || || ||||| ||||| | || | |||||| Sbjct 2511 ATTGTTGCCTAGTATCTGGGAAGTAGAAGCCGTCGGCATAGGTGCAACCAGCAAGCTGTT 2570 Query 114034 ACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGT 114093 || ||||| | ||| ||||| | ||||||||| | |||| || | | || Sbjct 2571 GCGCAGACCGTGTTCTACAATGCTTGCCTTGAGGGAGGCCCAATCCCAACGGGAGGATGG 2630 Query 114094 CTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGT 114153 ||| | | ||||||||||||||| || || |||| | | ||| || || ||||||| Sbjct 2631 CTCAACATTCCACATATCAAACTGTAGTATGCCTTTGCTCGTTGGAGAGCCGGCAAATGT 2690 Query 114154 CTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACAT 114213 ||| || || | ||| |||| ||| | | ||| || || ||| || Sbjct 2691 GGGGTAGGGCCCTTGCTCCTTTGCCAGCTCGTTGGATGATGTGAGAGCGGCAAAATAGAT 2750 Query 114214 TGTCTCAAAAATG-CGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGC 114272 |||||| |||||| || | || | || ||||| ||| || | | | || Sbjct 2751 TGTCTCGAAAATGTCGCG-GTTGAGGGCGCGTGCCTCTTCGCTGTCCCAAGGCATGCGCA 2809 Query 114273 ACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATAT 114332 | | || || || || || ||||| || || || |||||||| || | || | | | Sbjct 2810 AGAGAAGGAAGACGTCAGCAAGACCCTGTACTCCAAGGCCAATAGGCCTGTGACGTCTGT 2869 Query 114333 TAGACT-TTCGAGCGGTCT-CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 114390 | || | ||| || ||| | || || || | || || || ||| | || | || Sbjct 2870 TGGAGTGCTCG-GC-TTCTGCAACTGGGTAGTAGTTGACGTCTATTACCTTGTTCAAGTT 2927 Query 114391 TTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGA--GTCTCT 114448 ||||| ||||| | ||| ||||| |||| |||||| | | | ||||| Sbjct 2928 GCGCGTGACCACCTTGACCACCTCAAAGAGCTTCTCGTGATCAAA--TACCATTTTCTCT 2985 Query 114449 TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT- 114507 | | ||||| ||||| || || ||||| || |||||||| || || | | || || Sbjct 2986 TTGTCCACATATTTAGGCAGAGCCATTGAAGCGAGATTACATAC---GGCCACTTCTTTG 3042 Query 114508 -ATCA-GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTC 114565 | | ||| ||| | |||||| || || | || |||| | ||||||||| | || | Sbjct 3043 GGTGATGTGAACTGGACAATTTCAGTGCAAAGGTTGGAACATTGAATGGTGCCGAGGTGC 3102 Query 114566 TTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCC 114625 | || || || || | ||| || ||||||||| ||||| || || || || ||||| Sbjct 3103 TGGTGGTTGGATTTCGCGTTGCAGTGATCCTTGTAGAGCATATAAGGGGTACCGGTCTCT 3162 Query 114626 GTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCGGCTGGCACAGTGGCGT-TGGCTCG 114684 |||||| | | || || ||| | || || |||| ||| | || || Sbjct 3163 ATTTGGGCTTCCAAGATGGCAAACCAAAGCTCTTGAGCCTTAACAG-CACGTCTTGCACG 3221 Query 114685 CCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAG 114744 ||||| ||| || |||||| || | ||||| || | ||| ||| || Sbjct 3222 GCCCTCGCGCTCATAGCGTGTGTACAGCTCCTCAAATTCAGCTCCCCATTTGTCTTGAAG 3281 Query 114745 CCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCAT 114804 |||||||||| || || || || || ||||| | || || |||| || | || ||| Sbjct 3282 ACCTGGTGCCTCATTGGGACAAAACAGTGACCAGTCTCCTCCTGCCTCCACTCTCTCCAT 3341 Query 114805 GAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCT--TCTTCATCC 114862 ||| || || || | ||| ||||| ||||||||| | || ||| ||||| | Sbjct 3342 GAACAGATCGGGTACCCACAGAGCATGGAAGAGATCTC--TGGCTCGCTGCTCTTCCTTG 3399 Query 114863 CCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTAC 114922 || || || || ||||||||| || | ||| ||||||||||| || ||||| || Sbjct 3400 CCGTGGTTCTTTTTCAGCTCCAAAAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAG 3459 Query 114923 ACCGCGATTGACCCCTTAC---GACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTA 114979 | |||| || ||||| | | |||| | || | ||| || | |||||| |||| Sbjct 3460 ATTGCGAATGCTCCCTTCCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCATTG 3519 Query 114980 AATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAG 115037 | || || ||||||||||||| ||| | || ||| || || |||| || |||||| Sbjct 3520 TACACTCGCAGCATTGGAATGAGACCGTTGGACGTGCCGTTGGTGCCCCTGATGTACGAG 3579 Query 115038 ACTTATTGGCTCTGACATCATGGA---TGTGC------ATACCAATACCCCCTGCCCACT 115088 |||| || || | | ||||| | |||||| || || || | || Sbjct 3580 -----TTGG------CAGCACGAATTTTGTGCACACTAAGACCAATTCCTCCGGCGCTCT 3628 Query 115089 TTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACC---CT 115145 | || || ||||||| | || || |||| ||||| || || ||| | | Sbjct 3629 TAGAAATCAAGGCGCACTGTTTAAGCGTGTCGTATATCCCTTCTATGCTGTCTTCTTGCA 3688 Query 115146 TATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGG 115205 | || || |||||||| || | |||||| | ||| || ||||| ||||| || | Sbjct 3689 TGTTAACG---AGGAAGCACGAAGAAAGTTGTGGTCGTGGCGTGCCAGCATTGAAAAGTG 3745 Query 115206 TTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGG 115265 | || || || || |||| | ||| || || || || |||||||| || || Sbjct 3746 TGGGAGTGGCATGAGTGAATAATTGTTGAGAGATAAGATTATACGTCTCCAATACAGCTC 3805 Query 115266 GAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCA 115325 ||||| | ||| | || | | || ||||| ||||||| |||||| | |||| Sbjct 3806 TGATGTCAGTCTTGTGCAGTCCTACAGCAACTCGCATCAACATGTGTTGGGGCCTCTCCA 3865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596549308179120