Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq105396 199 4e-46 >seq105396 Length=45554 Score = 199 bits (220), Expect = 4e-46 Identities = 500/746 (67%), Gaps = 18/746 (2%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCT- 93950 ||||| || || || ||||| || || || || ||||| | |||||||| ||||| Sbjct 3755 GCCACTCCCACACTTTTCAATGCTGGCACGCCACGACCACAACTTTCTTCGTGCTTCCTC 3696 Query 93951 GATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGAC 94010 | | || |||| ||| ||| || || | ||||| || || || ||||| | Sbjct 3695 GTTAACATGCAAGAA-GACAGCATAGAAGGGATATACGACACGCTTAA--ACAGTGCGCC 3639 Query 94011 C--ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGT 94068 || || || ||| || ||||| || | ||||| ||| | | ||||| Sbjct 3638 TTGATTTCTAAGAGCGCCGGAGGAATTGGTCTTAGTGTGCACAAAATTCGTGCTGCCAAC 3579 Query 94069 TCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTC 94128 || |||||| | || ||||| ||||| |||||||| ||| | || ||||| || || | | Sbjct 3578 TCGTACATCAGGGGCACCAACGGCACGTCCAACGGTCTCATTCCAATGCTGCGAGTGTAC 3519 Query 94129 AACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTC 94188 || || | || |||||||| || || |||||||| | ||||||||| | ||||| || Sbjct 3518 AATGACACAGCACGCTACGTAGATCAAGGTGGTGGCAAGAGGAAGGGAGCATTCGCAATC 3459 Query 94189 TATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGC 94248 ||||| ||||| |||||||||||| | | || | || ||| ||||||||||||| Sbjct 3458 TATCTGGAGCCTTGGCACGCGGACATCTTTGAGTTTTTGGAGCTGAAAAAGAACCACGGC 3399 Query 94249 AACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || || | || | |||||||| |||||| | ||||| ||||| || || || || ||| Sbjct 3398 AAGGAAGAGCAGCGAGCCAGAGATCTCTTCCATGCTCTGTGGGTACCCGATCTGTTCATG 3339 Query 94309 AAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTG 94368 | | || ||| | | |||| || |||||||||||||| || || || Sbjct 3338 GAGAGAGTGGAGGCAGGAGGAGACTGGTCACTGTTTTGTCCCAATGAGGCACCAGGTCTT 3279 Query 94369 TCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGGCAA 94427 ||| || ||| | ||||| || |||| | || || | | ||| ||||| Sbjct 3278 CAAGACAAATGGGGAGCTGAATTTGAGGAGCTGTACACACGCTATG-AGCGCGAGGGC-C 3221 Query 94428 GGCCAGGAAG----GTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGG 94483 | || || | |||| || | | || |||| ||| | ||| |||| | || Sbjct 3220 GTGCAAGACGTGCTGTTAAGGCT-CAAG--AGCTTTGGTTTGCCATCTTGGAAGCCCAAA 3164 Query 94484 TGGAGACGGGTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAG 94542 | ||||| ||||| || || || | | |||||| | ||| |||||| || |||||||| Sbjct 3163 TAGAGACCGGTACCCCTTATATGCTCTACAAGGATCACTG-CAACGCGAAATCCAACCAC 3105 Query 94543 CAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCT 94602 ||||||||||| || | | || || || ||||| || |||||| ||| || || Sbjct 3104 CAGCACCTCGGCACCATTCAATGTTCCAACCTTTGCACTGAAATTGTCCAGTTCACATCA 3045 Query 94603 CCGGACGAGATTGCTGTGTGTAACCT 94628 || | || | || || ||||| || Sbjct 3044 CCCAAAGAAGTGGCCGTATGTAATCT 3019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494057092315440