Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq107649 95.1 9e-15 seq104739 91.5 1e-13 seq94522 87.8 1e-12 seq107474 86.0 4e-12 seq105818 84.2 2e-11 seq105340 84.2 2e-11 seq105140 84.2 2e-11 seq106987 82.4 5e-11 seq102031 82.4 5e-11 >seq107649 Length=18249 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || |||||||| || ||||| |||||||| ||| ||| | | |||| || Sbjct 6491 ACCAAGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGGCAAGAGTACGACCGTCCTCG 6432 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||||||| | ||||||||||| || ||| ||||| || |||||||| Sbjct 6431 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCGGGAGGAATGCCCTCCTTGTCCTGG 6372 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || ||| ||| | || ||| |||| | || || || | ||| ||||| || Sbjct 6371 ATCTTCTGTTTCACATTCTCGATACTATCAGAAGACTCAACTTCGAGGGTGATGGTCTTG 6312 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| || || || || || |||||| Sbjct 6311 CCGGTCAAGGTCTTAACGAAGATCTGCATA 6282 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||||| | | || ||| | ||||||||||| || || || |||||||| ||| Sbjct 5600 TGCCACCTCTAAGGCGTAGAACGAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGG 5541 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | | | | |||| || | || ||||||||| | ||||||||||| || ||| | Sbjct 5540 CCAAAGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCGGGAG 5481 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| || |||||||| ||| || || || | || |||| || ||| | Sbjct 5480 GAATGCCCTCCTTGTCTTGAATCTTCTGCTTGACGTTCTCGATAGAGTCAGAGGATTCGA 5421 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||||| || ||||| || || || || || ||||| ||||| Sbjct 5420 CTTCCAGAGTAATTGTCTTACCAGTGAGGGTCTTGACGAAAATCTGCAT 5372 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/209 (69%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||||||||| || ||||| |||||||||||| ||| | | |||| || Sbjct 5807 ACCAAGTGAAGGGTAGACTCCTTTTGGATGTTGTAATCGGC-AGAGTACGACCGTCCTCG 5749 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || |||||| | |||| |||||| || || ||||| ||||||||||| | Sbjct 5748 AGCTGCTTACCAGCGAAGATCAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGA 5689 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || || | || ||| |||| | || || || | ||| ||||| || Sbjct 5688 ATCTTCTGCTTGACGTTCTCAATACTATCAGAAGACTCGACCTCAAGGGTGATGGTCTTG 5629 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| || || || || || ||||| Sbjct 5628 CCAGTCAAGGTCTTGACGAAGATCTGCAT 5600 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| || ||||| || ||||| |||||||| ||| ||| | | |||| || Sbjct 6719 ACCAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGCAAGAGTACGACCGTCCTCG 6660 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || |||||| | ||||||||||| || ||| ||||| || |||||||| Sbjct 6659 AGCTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGAATGCCCTCCTTGTCCTGT 6600 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || ||| | || || |||| | || || || | ||| ||||| || Sbjct 6599 ATCTTCTGCTTCACATTCTCGATGCTATCAGAAGACTCAACTTCGAGGGTGATGGTCTTG 6540 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| || || || || || |||||| Sbjct 6539 CCGGTCAAGGTCTTAACGAAGATCTGCATA 6510 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| ||||| || ||||| |||||||| || || | | |||| || Sbjct 6947 ACCAAGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCCTCG 6888 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||| ||| | ||||||||||| || ||| ||||| || |||||||| | Sbjct 6887 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCGGGAGGAATGCCCTCCTTGTCCTGA 6828 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || || | || ||| |||| | || || || | ||| ||||| || Sbjct 6827 ATCTTCTGCTTGACGTTCTCAATACTATCAGAAGACTCAACTTCGAGGGTGATGGTCTTG 6768 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| ||| || || || || |||||| Sbjct 6767 CCAGTCAAAGTCTTGACGAAGATCTGCATA 6738 >seq104739 Length=6556 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || |||||||||||||| || ||||| ||||| || ||| ||| | | | |||| || Sbjct 5465 ACCAAATGAAGGGTAGATTCCTTTTGGATGTTATAGTCGGCGAGTGTACGCCCGTCCTCC 5406 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||| ||| | ||||||||||| ||||| ||||| || |||||||| | Sbjct 5405 AGCTGCTTGCCTGCGAAGATCAAACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGA 5346 Query 15088 A--TTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 | |||||| || || | || || |||| || || || | ||||||||| | Sbjct 5345 ATCTTTTGC--TTCACGTTCTCGATGCTATCAGAGGACTCCACTTCAAGGGTAATGGTCT 5288 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || |||| || || || || || ||||| Sbjct 5287 TGCCAGTCAATGTCTTCACGAAGATCTGCAT 5257 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || ||||| |||||||| || || | | |||| || Sbjct 6149 ACCAAGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCTGCCAGTGTACGACCGTCCTCG 6090 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||| ||| | ||||||||||| ||||| ||| || ||||||||||| Sbjct 6089 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGTGGGATGCCTTCCTTGTCCTGG 6030 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || ||||| | || || |||| | || || || ||||| ||||| ||| Sbjct 6029 ATCTTCTGCTTTACGTTCTCAATGCTATCAGAGCTCTCCACCTCCAAGGTGATGGTCTTA 5970 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| || || || || || ||||| Sbjct 5969 CCGGTCAAGGTCTTAACGAAGATCTGCAT 5941 >seq94522 Length=3036 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || ||||| || | || || |||||||| || || ||||| |||||||| ||| Sbjct 1241 CCTCCACGCAACCTGAGCACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCC 1182 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | |||| || | || ||||| || | || | ||||| ||||| || Sbjct 1181 AAAGTGCGACCGTCCTCAAGCTGCTTGCCTGCAAAGATGAGGCGCTGCTGGTCAGGGGGG 1122 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| ||| || || || | || |||| || || || Sbjct 1121 ATGCCTTCCTTGTCCTGAATCTTCTGCTTAACGTTCTCGATAGAGTCAGAGGACTCCACT 1062 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || ||||| ||||| || || |||| |||||||||||| ||||||||| Sbjct 1061 TCCAAGGTGATGGTCTTGCCAGTCAAAGTTTTTACAAAGATTTGCATA 1014 >seq107474 Length=3350 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || ||||||||||| | || | |||||| ||||| || ||||| |||||||| ||| Sbjct 2439 CCTCCTCGCAATCTGAGCACCAGATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGCC 2380 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | || || | || ||||| || | |||||||| || ||||| ||| Sbjct 2379 AAGGTACGACCATCCTCGAGCTGCTTGCCTGCAAAGATCAAACGTTGCTGGTCAGGAGGA 2320 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || |||||||| || || || ||| | || || | || ||| || Sbjct 2319 ATGCCCTCCTTGTCTTGGATCTTCTGCTTCACATTCTCGATGCTGTCAGAGGATTCGACC 2260 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | |||||||||||| || || || || ||||| ||||| ||||| Sbjct 2259 TCAAGGGTAATGGTTTTTCCAGTGAGGGTCTTTACGAAAATCTGCAT 2213 >seq105818 Length=6286 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || ||||| |||||||| || || | | |||| || Sbjct 5736 ACCAAGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCTGCCAGTGTACGACCGTCCTCG 5795 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||| ||| | ||||||||||| ||||| ||| || ||||||||||| Sbjct 5796 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGTGGGATGCCTTCCTTGTCCTGG 5855 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || ||||| | || || |||| | || || || ||||| ||||| ||| Sbjct 5856 ATCTTCTGCTTTACGTTCTCAATGCTATCAGAGCTCTCCACCTCCAAGGTGATGGTCTTA 5915 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| || || || || || ||||| Sbjct 5916 CCGGTCAAGGTCTTAACGAAGATCTGCAT 5944 >seq105340 Length=700 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || ||||| |||||||||||| ||| | | |||| || Sbjct 156 ACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCGGCAAGAGTACGACCGTCCTCG 97 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 | || || |||||| | ||||||||||| ||||| ||||| ||||||||||| Sbjct 96 AGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTC 41 >seq105140 Length=834 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| ||||| || ||||| |||||||| ||| ||| | | |||| || Sbjct 438 ACCAAGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCA 379 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||||| || || | || | |||||| || || || || || |||||||| | Sbjct 378 AGCTGTTTACCTGCAAAGATGAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTCTTGA 319 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || ||| ||| | || || | || | || || || || || ||||| || Sbjct 318 ATCTTCTGTTTCACATTCTCGATGCTGTCAGAAGACTCCACTTCCAAAGTGATGGTCTTG 259 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||||||||||||||| || ||||| Sbjct 258 CCAGTCAGAGTTTTTACAAAGATCTGCAT 230 >seq106987 Length=13006 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| ||||| || || || |||||||| ||| ||| | | |||| || Sbjct 1212 ACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGACCGTCCTCA 1271 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || ||||| | || | |||||| ||||| ||||| ||||||||||| Sbjct 1272 AGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGT 1331 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || |||||| | || || | || ||| || || | |||||||||||| Sbjct 1332 ATCTTCTGCTTTACATTCTCGATGCTGTCAGAGGATTCGACCTCAAGGGTAATGGTTTTT 1391 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || || ||||| |||||| Sbjct 1392 CCGGTGAGGGTCTTCACGAAAATCTGCATA 1421 >seq102031 Length=4190 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTC 15026 || || ||||||||||| || || || |||||||| || || || | | | || || Sbjct 1452 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAGG-TACGACCATCCTC 1510 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || ||||| || | || | ||||||||||| ||| || |||||||| || Sbjct 1511 AAGCTGCTTGCCTGCAAAGATGAGGCGCTGTTGGTCTGGTGGGATGCCTTCCTTATCTTG 1570 Query 15087 AAT--TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||| ||||||| ||| | || || | || | || || ||||| || ||||| Sbjct 1571 AATCTTTTGCTTC--ACATTCTCGATGCTGTCAGAGCTCTCCACCTCTAAAGTGATGGTC 1628 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || |||| |||||||||||| |||||||| Sbjct 1629 TTGCCGGTCAAAGTTTTTACAAAGATTTGCAT 1660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356922828514490