Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq107474 114 1e-20 seq104739 113 4e-20 seq106909 104 2e-17 seq93816 98.7 9e-16 seq105140 96.9 3e-15 seq95316 93.3 4e-14 seq95946 91.5 1e-13 seq94522 91.5 1e-13 seq102031 87.8 2e-12 seq106987 86.0 6e-12 seq94218 82.4 7e-11 >seq107474 Length=3350 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 |||||| || | || | ||| ||||| || || || ||||||||||| || || ||| Sbjct 2440 TCCTCCTCGCAATCTGAGCACCAGATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGC 2381 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | ||| | ||| || | || || ||||| | ||||| ||||||||||| || || Sbjct 2380 CAAGGTACGACCATCCTCGAGCTGCTTGCCTGCAAAGATCAAACGTTGCTGGTCAGGAGG 2321 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292 |||||| || || ||||| || || || || | || | | |||| || || ||||| Sbjct 2320 AATGCCCTCCTTGTCTTGGATCTTCTGCTTCACATTCTCGATGCTGTCAGAGGATTCGAC 2261 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || |||| ||||| || || || || ||||| ||||| ||||| Sbjct 2260 CTCAAGGGTAATGGTTTTTCCAGTGAGGGTCTTTACGAAAATCTGCAT 2213 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||||||||| || || || | ||| ||| || | ||| Sbjct 1503 TGGAGGGTGGATTCCTTTTGGATGTTGTAGTCAGCCAAGGTGCGGCCATCCTCGAGTTGC 1444 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || | || |||||||| || || ||||| || || ||||| || || Sbjct 1443 TTACCAGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTC 1384 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || || | || | || || || ||||| |||||||| |||| ||||||||||| Sbjct 1383 TGCTTCACATTCTCGATGGAATCAGAGGACTCCACTTCGAGGGTAATAGTTTTGCCGGTC 1324 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| || || ||||| Sbjct 1323 AGAGTCTTTACGAAGATCTGCAT 1301 >seq104739 Length=6556 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | | ||| | ||| || || |||||||||||||| ||||| ||| Sbjct 5486 ATGCCTCCTCGAAGGCGAAGCACCAAATGAAGGGTAGATTCCTTTTGGATGTTATAGTCG 5427 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || || |||| || || |||||| | ||||| || |||||||| || Sbjct 5426 GCGAGTGTACGCCCGTCCTCCAGCTGCTTGCCTGCGAAGATCAAACGCTGCTGGTCAGGG 5367 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || || |||||||| ||||| || | || | || | | | || || ||||| Sbjct 5366 GGAATGCCCTCCTTGTCTTGAATCTTTTGCTTCA-CGTTCTCGATGCTATCAGAGGACTC 5308 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || |||| || ||||| || | || || || || || ||||| Sbjct 5307 CACTTCAAGGGTAATGGTCTTGCCAGTCAATGTCTTCACGAAGATCTGCAT 5257 >seq106909 Length=2620 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| | ||| || || || |||||||||||||| || ||| | ||| || || Sbjct 2369 CACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCGGCCAAGGTGCGGCCGTCCTC 2428 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||| || || ||||| | |||| || ||||| || || || ||||| || |||||||| Sbjct 2429 CAACTGCTTGCCTGCAAAGATCAGGCGCTGCTGATCAGGTGGGATGCCCTCCTTATCTTG 2488 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 ||| ||||| |||| || | || | | |||| || || ||||| | ||| | || | Sbjct 2489 AATCTTTTGCTTGA-CGTTCTCGATGCTGTCAGAGCTTTCCACTTCCAAAGTGATGGTCT 2547 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || | |||||||||||| || ||||| Sbjct 2548 TGCCAGTCAAAGTTTTTACAAAGATCTGCAT 2578 >seq93816 Length=1867 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || || || |||||||| ||||| || ||| | ||| | ||| || | || Sbjct 259 ATGGAGAGTAGACTCCTTTTGAATATTGTAGTCGGCCAAGGTACGACCATCCTCAAGCTG 318 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 || |||||| | || | || || ||||| || || ||||| || || || || || || Sbjct 319 CTTGCCTGCGAAGATGAGGCGCTGTTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTT 378 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||||| | || | || || || ||||| |||||||| |||| ||||||||||| Sbjct 379 CTGTTTCACATTCTCAATGGAATCAGAGGACTCCACTTCGAGGGTAATAGTTTTGCCGGT 438 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| || || ||||| Sbjct 439 CAGAGTCTTTACGAAGATCTGCAT 462 >seq105140 Length=834 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||||||||| || || ||| || || || || | ||| Sbjct 432 TGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCAAGCTGT 373 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || ||||| | || | || ||||| || || || ||||| || || |||||||| || Sbjct 372 TTACCTGCAAAGATGAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTCTTGAATCTTC 313 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||||| | || | | |||| |||||||| ||||| | ||| | || ||||| || Sbjct 312 TGTTTCACATTCTCGATGCTGTCAGAAGACTCCACTTCCAAAGTGATGGTCTTGCCAGTC 253 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 |||||||||||||| || ||||| Sbjct 252 AGAGTTTTTACAAAGATCTGCAT 230 >seq95316 Length=972 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 |||||| || | | | ||| || || || || || ||||| ||||| || || || | Sbjct 606 TCCTCCACGCAATCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTC--T 549 Query 45173 GACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | | | | || ||| || | ||| || ||||| | ||||| ||||||||||| ||| Sbjct 548 GCCAGAGTACGACCATCTTCAAGTTGCTTGCCTGCAAAGATCAAACGTTGCTGGTCAGGC 489 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || |||||||| || || || || || || |||| || | || | | |||| || ||| Sbjct 488 GGGATGCCTTCCTTGTCCTGGATCTTCTGCTTGA-CGTTCTCAATGCTGTCAGAGCTCTC 430 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||||| || ||||| || | || || ||||| |||||||| Sbjct 429 CACCTCCAAAGTAATGGTCTTGCCAGTCAATGTCTTCACAAAGATTTGCAT 379 >seq95946 Length=1196 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 |||||| || | || | ||| ||||| || || || ||||||||||| || || ||| Sbjct 199 TCCTCCTCGCAATCTGAGCACCAGATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGC 140 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | ||| | ||| || | || || ||||| | ||||| ||||||||||| || || Sbjct 139 CAAGGTACGACCATCCTCGAGCTGCTTGCCTGCAAAGATCAAACGTTGCTGGTCAGGAGG 80 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292 |||||| || || ||||| || || || || | || | | |||| || || ||||| Sbjct 79 AATGCCCTCCTTGTCTTGGATCTTCTGCTTCACATTCTCGATGCTGTCAGAGGATTCGAC 20 Query 45293 TTCGAGAGTAACCGTTTT 45310 || || |||| ||||| Sbjct 19 CTCAAGGGTAATGGTTTT 2 >seq94522 Length=3036 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||||||||| || || ||| || ||| | ||| || | || Sbjct 989 TGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCAAGCTGC 930 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | || | |||||||| || || || |||||||| || |||||||| || Sbjct 929 TTACCGGCAAAGATAAGGCGTTGCTGATCAGGGGGGATGCCTTCCTTGTCTTGAATCTTC 870 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || |||| || | || | | |||| || ||||| || || ||||| | || ||||| || Sbjct 869 TGCTTGA-CGTTCTCGATGCTGTCAGAGGACTCCACCTCCAGAGTGATGGTCTTGCCAGT 811 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| || || || ||||| Sbjct 810 CAAGGTTTTAACGAAGATCTGCAT 787 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 |||||| || | ||| | ||| | || || || || ||||||||||| || || ||| Sbjct 1242 TCCTCCACGCAACCTGAGCACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGC 1183 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | || | || || | || || ||||| | || | || |||||||| || || Sbjct 1182 CAAAGTGCGACCGTCCTCAAGCTGCTTGCCTGCAAAGATGAGGCGCTGCTGGTCAGGGGG 1123 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291 |||||||| || || ||||| || || || | || | || | | ||| || ||||| | Sbjct 1122 GATGCCTTCCTTGTCCTGAATCTTCTGCTTAA-CGTTCTCGATAGAGTCAGAGGACTCCA 1064 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| | || | || ||||| || | |||||||||||| |||||||| Sbjct 1063 CTTCCAAGGTGATGGTCTTGCCAGTCAAAGTTTTTACAAAGATTTGCAT 1015 >seq102031 Length=4190 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||| ||||| || || || | ||| | ||| || | || Sbjct 1458 TGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTACGACCATCCTCAAGCTGC 1517 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || ||||| | || | || || ||||| || || |||||||| ||||||||||| ||| Sbjct 1518 TTGCCTGCAAAGATGAGGCGCTGTTGGTCTGGTGGGATGCCTTCCTTATCTTGAATCTTT 1577 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || || | || | | |||| || ||| || || | ||| | || |||||||| Sbjct 1578 TGCTTCACATTCTCGATGCTGTCAGAGCTCTCCACCTCTAAAGTGATGGTCTTGCCGGTC 1637 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | |||||||||||| |||||||| Sbjct 1638 AAAGTTTTTACAAAGATTTGCAT 1660 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||||||||| || || || | || | || || | || Sbjct 1002 TGGAGGGTAGATTCCTTTTGGATGTTGTAGTCAGCAAGTGTCCTGCCGTCCTCGAGCTGC 1061 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || ||||| | ||||| || |||||||| || || ||||| || || || || || || Sbjct 1062 TTGCCTGCAAAGATCAAACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTC 1121 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || || | ||| | | |||| || ||||| || || | ||| | || || ||||| Sbjct 1122 TGCTTCACGTTTTCGATGCTGTCAGAGGACTCCACCTCCAAAGTGATGGTCTTTCCGGTC 1181 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | |||||||||||| || ||||| Sbjct 1182 AAAGTTTTTACAAAGATCTGCAT 1204 >seq106987 Length=13006 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | || | || || || || || || |||||||| ||||| || || || Sbjct 1647 ATGCCTCCCCTAAGGCGCAGAACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCA 1706 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | || || ||||| | ||||| || ||||| || ||| Sbjct 1707 GCCAAGGTGCGACCATCCTCGAGCTGCTTGCCTGCAAAGATCAAACGCTGCTGATCAGGC 1766 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || || || || || || || | ||| | | |||| || || Sbjct 1767 GGAATGCCTTCCTTGTCCTGGATCTTCTGCTTCACATTTTCGATGCTGTCCGAGCTTTCA 1826 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || ||||| || | |||||| || ||||| ||||| Sbjct 1827 ACCTCGAGGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAAATCTGCAT 1876 >seq94218 Length=738 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/225 (69%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 |||||| || | | | ||| || || || || || ||||| ||||| || || || | Sbjct 222 TCCTCCACGCAATCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTC--T 165 Query 45173 GACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | | | | || ||| || | ||| || ||||| | ||||| ||||||||||| ||| Sbjct 164 GCCAGAGTACGACCATCTTCAAGTTGCTTGCCTGCAAAGATCAAACGTTGCTGGTCAGGC 105 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || |||||||| || || || || || || |||| || | || | | |||| || ||| Sbjct 104 GGGATGCCTTCCTTGTCCTGGATCTTCTGCTTGA-CGTTCTCAATGCTGTCAGAGCTCTC 46 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAAT 45334 || || | ||||| || ||||| || | || || ||||| || Sbjct 45 CACCTCCAAAGTAATGGTCTTGCCAGTCAATGTCTTCACAAAGAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451394611591440