Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq105396 214 2e-50 >seq105396 Length=45554 Score = 214 bits (236), Expect = 2e-50 Identities = 922/1431 (64%), Gaps = 35/1431 (2%) Strand=Plus/Plus Query 115875 AAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTC 115934 ||| || || || | | |||| || ||||| || | ||||| |||||||||||||| Sbjct 2451 AAAGTCTCCAGCCAAGATGCGCCTTGTGTAGATATTAGAAGTGTAAGGCTCAAAGCACTC 2510 Query 115935 ATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 |||||| || | || |||| || || || || ||||| ||||| | || | |||||| Sbjct 2511 ATTGTTGCCTAGTATCTGGGAAGTAGAAGCCGTCGGCATAGGTGCAACCAGCAAGCTGTT 2570 Query 115995 GCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGT 116054 ||| ||||| | ||||| | ||||||||| | |||| || | | || Sbjct 2571 GCGCAGACCGTGTTCTACAATGCTTGCCTTGAGGGAGGCCCAATCCCAACGGGAGGATGG 2630 Query 116055 CTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGT 116114 ||| | | ||||||||||||||| || || |||| | || ||| || || ||||||| Sbjct 2631 CTCAACATTCCACATATCAAACTGTAGTATGCCTTTGCTCGTTGGAGAGCCGGCAAATGT 2690 Query 116115 CTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACAT 116174 || || || | ||| |||| ||| | | ||| || || ||| || Sbjct 2691 GGGGTAGGGCCCTTGCTCCTTTGCCAGCTCGTTGGATGATGTGAGAGCGGCAAAATAGAT 2750 Query 116175 TGTCTCAAAAATG-CGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGC 116233 |||||| |||||| || | || | || ||||| ||| || | | | || Sbjct 2751 TGTCTCGAAAATGTCGCGG-TTGAGGGCGCGTGCCTCTTCGCTGTCCCAAGGCATGCGCA 2809 Query 116234 ACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATAT 116293 | | || || || || || ||||| || || || |||||||| || | || | | | Sbjct 2810 AGAGAAGGAAGACGTCAGCAAGACCCTGTACTCCAAGGCCAATAGGCCTGTGACGTCTGT 2869 Query 116294 TAGACTT-TCGAGCGGTCTCCA-CGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 116351 | || | ||| || ||| || | || || | || || || ||| | || | || Sbjct 2870 TGGAGTGCTCG-GCT-TCTGCAACTGGGTAGTAGTTGACGTCTATTACCTTGTTCAAGTT 2927 Query 116352 TTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGT--CTCT 116409 ||||| ||||| | ||| ||||| |||| |||||| | | | | |||| Sbjct 2928 GCGCGTGACCACCTTGACCACCTCAAAGAGCTTCTCGTGATCAAA--TACCATTTTCTCT 2985 Query 116410 TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 116469 | | ||||| ||||| || || ||||| || |||||||| || || | | || || Sbjct 2986 TTGTCCACATATTTAGGCAGAGCCATTGAAGCGAGATTACATAC---GGCCACTTCTTTG 3042 Query 116470 --TCA-GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTC 116526 | | ||| ||| | |||||| || || | || |||| | ||||||||| | || | Sbjct 3043 GGTGATGTGAACTGGACAATTTCAGTGCAAAGGTTGGAACATTGAATGGTGCCGAGGTGC 3102 Query 116527 TTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCC 116586 | || || || || | ||| || |||||||||||||||||| || || || ||||| Sbjct 3103 TGGTGGTTGGATTTCGCGTTGCAGTGATCCTTGTAGAGCATATAAGGGGTACCGGTCTCT 3162 Query 116587 GTTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGT-TGGCTCG 116645 |||||| | | || || ||| | || || |||| ||| | || || Sbjct 3163 ATTTGGGCTTCCAAGATGGCAAACCAAAGCTCTTGAGCCTTAACAGCA-CGTCTTGCACG 3221 Query 116646 CCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACA---GCCTCTGA 116702 ||||| ||| || |||||| || ||||||| || | ||| || | || ||| Sbjct 3222 GCCCTCGCGCTCATAGCGTGTGTACAGCTCCTCAAATTCAGCTCCC-CATTTGTCT-TGA 3279 Query 116703 GAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTT 116762 || |||||||||| || ||||| || || ||||| | || || |||| || | || Sbjct 3280 -AGACCTGGTGCCTCATTGGGACAAAACAGTGACCAGTCTCCTCCTGCCTCCACTCTCTC 3338 Query 116763 CATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCT--TCTTCA 116820 |||||| || || || | ||| || || ||||||||| | || ||| ||||| Sbjct 3339 CATGAACAGATCGGGTACCCACAGAGCATGGAAGAGATCTCTG--GCTCGCTGCTCTTCC 3396 Query 116821 TCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGG 116880 | || || || || ||||||||| || | ||| ||||||||||| || ||||| Sbjct 3397 TTGCCGTGGTTCTTTTTCAGCTCCAAAAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGA 3456 Query 116881 TACACCGCGATTGACCCCTTGC---GACGACCAGCCTGGTTTACATACCTCGCCGTTGCG 116937 || | |||| || ||||| | | |||| | || | ||| || | || || | Sbjct 3457 TAGATTGCGAATGCTCCCTTCCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCA 3516 Query 116938 TTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATAC 116995 || | || || ||||||||||||| ||| | || ||| || || |||| || ||| Sbjct 3517 TTGTACACTCGCAGCATTGGAATGAGACCGTTGGACGTGCCGTTGGTGCCCCTGATGTAC 3576 Query 116996 GAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGA 117055 ||| ||| || | | | ||| | | |||||| || || || | ||| || | Sbjct 3577 GAG--TTGGCAGCACGAATTTTGTGCACACTAAGACCAATTCCTCCGGCGCTCTTAGAAA 3634 Query 117056 TTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGA 117115 | ||||||| | || || |||| ||||| || || ||| | | | | Sbjct 3635 TCAAGGCGCACTGTTTAAGCGTGTCGTATATCCCTTCTATGCTGTCTTCTTGCATGTTAA 3694 Query 117116 TGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCG 117175 ||||||||| || | |||||| | ||| || ||||| ||||| || || || || | Sbjct 3695 CGAGGAAGCACGAAGAAAGTTGTGGTCGTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGG 3754 Query 117176 CGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTT 117235 | || |||| | ||| || || || || |||||||| |||| ||||| Sbjct 3755 CATGAGTGAATAATTGTTGAGAGATAAGATTATACGTCTCCAATACAGCTCTGATGTCAG 3814 Query 117236 CCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCA 117286 | ||| | || | | || ||||| ||||||| |||||| | |||| Sbjct 3815 TCTTGTGCAGTCCTACAGCAACTCGCATCAACATGTGTTGGGGCCTCTCCA 3865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612681158568240