Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq104633 122 1e-22 seq99766 122 1e-22 seq99765 122 1e-22 seq105396 105 1e-17 seq96527 96.9 6e-15 >seq104633 Length=6721 Score = 122 bits (134), Expect = 1e-22 Identities = 295/441 (67%), Gaps = 13/441 (3%) Strand=Plus/Minus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 ||| ||| |||| || || ||||||||||||| || || || |||||| | ||| Sbjct 2689 CACCTTCCTCTCAAAGAAATTGGTCTTGCCCTGCAGCGAAATCATTTCCATCCAAGGGAA 2630 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 ||||| | || ||| ||| | |||| ||||| | || | ||||||||||| Sbjct 2629 GGGGTTGGCCGTGTTGTAGACCTTGGAGCATCCAAGAGCGACGAGAAGTCTGTCTGCCAC 2570 Query 159763 AAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGC 159822 |||||| ||||| |||||| || | ||| || || | || | ||| || |||| Sbjct 2569 AAATTCAATGTATTGACACATGAGCGCGGCGTTCATTCCAATGAGGCCAACAGGAAGCGA 2510 Query 159823 TTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCG-AGACA---C 159878 || || | ||| ||||| |||||||| || || || | | || || | | || | Sbjct 2509 CTCAGAGACAAATTCCTTTTCAATCTCCACAGCCTCCTTGATGATTTGTGTGGGCATGTC 2450 Query 159879 GTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGT 159938 | | | | |||| ||| | | ||| || ||||||| || ||||||||||| | Sbjct 2449 GGTGGAAGGCCGG-TTGACGAGCATGCTGT------ACAGGAGACAGGCAAAGTCGCAAT 2397 Query 159939 GCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCAC 159998 | || ||||| || | ||| ||||| ||| | | |||||| ||||||| || | Sbjct 2396 GAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGGCCAGGCATGAGGCCCC 2337 Query 159999 GCGGTTTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCC 160057 | ||||||||||| |||| || |||| || || ||||| || |||||||| Sbjct 2336 TCTTCTTGAGCCAAAAGATGG-AACAGAAGCTTCCAGAGAAGAAGATGCCTTCCACGGCG 2278 Query 160058 GCAAACGCCACGAGCCTCTCA 160078 || || || || | |||||| Sbjct 2277 GCGAATGCAACCAATCTCTCA 2257 >seq99766 Length=6639 Score = 122 bits (134), Expect = 1e-22 Identities = 295/441 (67%), Gaps = 13/441 (3%) Strand=Plus/Minus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 ||| ||| |||| || || ||||||||||||| || || || |||||| | ||| Sbjct 1744 CACCTTCCTCTCAAAGAAATTGGTCTTGCCCTGCAGCGAAATCATTTCCATCCAAGGGAA 1685 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 ||||| | || ||| ||| | |||| ||||| | || | ||||||||||| Sbjct 1684 GGGGTTGGCCGTGTTGTAGACCTTGGAGCATCCAAGAGCGACGAGAAGTCTGTCTGCCAC 1625 Query 159763 AAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGC 159822 |||||| ||||| |||||| || | ||| || || | || | ||| || |||| Sbjct 1624 AAATTCAATGTATTGACACATGAGCGCGGCGTTCATTCCAATGAGGCCAACAGGAAGCGA 1565 Query 159823 TTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCG-AGACA---C 159878 || || | ||| ||||| |||||||| || || || | | || || | | || | Sbjct 1564 CTCAGAGACAAATTCCTTTTCAATCTCCACAGCCTCCTTGATGATTTGTGTGGGCATGTC 1505 Query 159879 GTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGT 159938 | | | | |||| ||| | | ||| || ||||||| || ||||||||||| | Sbjct 1504 GGTGGAAGGCCGG-TTGACGAGCATGCTGT------ACAGGAGACAGGCAAAGTCGCAAT 1452 Query 159939 GCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCAC 159998 | || ||||| || | ||| ||||| ||| | | |||||| ||||||| || | Sbjct 1451 GAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGGCCAGGCATGAGGCCCC 1392 Query 159999 GCGGTTTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCC 160057 | ||||||||||| |||| || |||| || || ||||| || |||||||| Sbjct 1391 TCTTCTTGAGCCAAAAGATGG-AACAGAAGCTTCCAGAGAAGAAGATGCCTTCCACGGCG 1333 Query 160058 GCAAACGCCACGAGCCTCTCA 160078 || || || || | |||||| Sbjct 1332 GCGAATGCAACCAATCTCTCA 1312 >seq99765 Length=6612 Score = 122 bits (134), Expect = 1e-22 Identities = 295/441 (67%), Gaps = 13/441 (3%) Strand=Plus/Minus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 ||| ||| |||| || || ||||||||||||| || || || |||||| | ||| Sbjct 1744 CACCTTCCTCTCAAAGAAATTGGTCTTGCCCTGCAGCGAAATCATTTCCATCCAAGGGAA 1685 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 ||||| | || ||| ||| | |||| ||||| | || | ||||||||||| Sbjct 1684 GGGGTTGGCCGTGTTGTAGACCTTGGAGCATCCAAGAGCGACGAGAAGTCTGTCTGCCAC 1625 Query 159763 AAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGC 159822 |||||| ||||| |||||| || | ||| || || | || | ||| || |||| Sbjct 1624 AAATTCAATGTATTGACACATGAGCGCGGCGTTCATTCCAATGAGGCCAACAGGAAGCGA 1565 Query 159823 TTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCG-AGACA---C 159878 || || | ||| ||||| |||||||| || || || | | || || | | || | Sbjct 1564 CTCAGAGACAAATTCCTTTTCAATCTCCACAGCCTCCTTGATGATTTGTGTGGGCATGTC 1505 Query 159879 GTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGT 159938 | | | | |||| ||| | | ||| || ||||||| || ||||||||||| | Sbjct 1504 GGTGGAAGGCCGG-TTGACGAGCATGCTGT------ACAGGAGACAGGCAAAGTCGCAAT 1452 Query 159939 GCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCAC 159998 | || ||||| || | ||| ||||| ||| | | |||||| ||||||| || | Sbjct 1451 GAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGGCCAGGCATGAGGCCCC 1392 Query 159999 GCGGTTTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCC 160057 | ||||||||||| |||| || |||| || || ||||| || |||||||| Sbjct 1391 TCTTCTTGAGCCAAAAGATGG-AACAGAAGCTTCCAGAGAAGAAGATGCCTTCCACGGCG 1333 Query 160058 GCAAACGCCACGAGCCTCTCA 160078 || || || || | |||||| Sbjct 1332 GCGAATGCAACCAATCTCTCA 1312 >seq105396 Length=45554 Score = 105 bits (116), Expect = 1e-17 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 203843 TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTC 203902 || || |||||||| ||||||| ||||||| | | | | || ||||||||||| ||| Sbjct 2095 TCAACGGTGAACTGGATGGCGTCAGCGGCAGGGCGGGTGCGTAGGTAGTACATGCCAGTC 2154 Query 203903 TTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCG 203962 ||||||||||||| ||| |||| | |||||| || | ||| || | ||| || Sbjct 2155 TTTAGGCCCTTCTTCCATGCGTAAAAGTGCATCGACGTGAGTCTGGCGAATGAGGGCTCT 2214 Query 203963 GCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATA 204022 ||||| | | ||| || |||||||||||||||| | | || || || || ||||| Sbjct 2215 GCCATATATACGTTTAGGCTCTGGCTTTGGTCGATGTACGCTGCTCGGTCAGCTGCCATG 2274 Query 204023 TTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA 204065 | | | | ||| | ||||||||| || || ||| ||| Sbjct 2275 TCTAAGAGAATACGCTGAGGAATCTCCCAAACTGTTTTGTACA 2317 >seq96527 Length=155711 Score = 96.9 bits (106), Expect = 6e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 159926 GCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCC 159985 ||||| | ||||| || ||||| || | | ||| ||||||||||| | | ||||||| Sbjct 53885 GCAAATTTACAGTGGAGGCCCTCATCTCTGGCGATAAACTCGTTGGAGAGGGTGAGGCCA 53944 Query 159986 GGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGAT 160044 |||||||| || ||| |||| |||| |||||| | || |||| || ||| ||||| Sbjct 53945 GGCATGATGCCTCGCTTCTTGATCCAATAAATGG-CACAGAAGCTTCCAGAAAAGAAGAT 54003 Query 160045 CCCCTCCACGGCCGCAAACGCCACGAG 160071 ||||| ||||| ||||| ||||| || Sbjct 54004 GCCCTCGACGGCAGCAAAGGCCACCAG 54030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794084583159840