Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq105706 161 1e-34 seq99027 154 2e-32 seq105396 152 7e-32 >seq105706 Length=32710 Score = 161 bits (178), Expect = 1e-34 Identities = 286/417 (69%), Gaps = 0/417 (0%) Strand=Plus/Minus Query 7228 GAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAAC 7287 |||||| || |||| ||||| ||||| |||||||| ||| || ||||||||||| Sbjct 3631 GAACAAATCAGCGCACAACTCCTCGAAACGAGCACGGGTGATGCTGGTGTAGAAATCAAC 3572 Query 7288 GCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTT 7347 || || || | || || ||||||||| | || || | | ||||| | | || ||| Sbjct 3571 ACCCTCATACAGAGAGTCGATTTCAATGTTGGTCTGGGTGGAGGAAGACAGAGCTCTCTT 3512 Query 7348 TGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTT 7407 || | ||| || || || | || | || | ||||| | || ||||| ||||| || Sbjct 3511 GGCTCTCTCGCAAGCAGTCCTCAATCTGCGCACAGCACGGGCATTTCCGGAGATATCCTT 3452 Query 7408 CTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTC 7467 || || | || || |||| |||||| | | ||| |||||| || || Sbjct 3451 GCCGTGCTTCCTCTTGAATTCTTGGATGAAGTGGGTCACCATTCTGTTATCGAAGTCCTC 3392 Query 7468 ACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTT 7527 ||| |||||||| || || || || || || ||||||||||||||||| | |||||| | Sbjct 3391 ACCTCCCAAGTGAGTGTCACCAGCTGTGGCCTTGACTTCAAAGATACCCTCCTCAATGGT 3332 Query 7528 TAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTC 7587 | | || |||||||| |||||||| |||| || || || | |||||| | || | Sbjct 3331 AAGGAGAGACACATCAAAAGTACCACCTCCCAAATCGAAGATCAAAACGTTCATTTCACC 3272 Query 7588 GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAAT 7644 | | ||||| || | ||| || || || || || || || || || |||||||| Sbjct 3271 CTTGCTCTTCTTGTCCAAACCATAGGCAATGGCAGCAGCTGTGGGCTCGTTAATAAT 3215 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/221 (71%), Gaps = 7/221 (3%) Strand=Plus/Minus Query 7882 CTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGG--TCCGAAAACTTTCTTCCG 7939 |||| | | ||| | ||||| || |||| || | ||| || || || || | ||| Sbjct 2707 CTTACATGGCCAGTGCTTCATGTCTGCTTGAAC--GATGGGATCAGAGAAGTTACGACCG 2650 Query 7940 ATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCC 7999 || | |||||| || || || || ||||| | ||||||||||| ||||||||| || Sbjct 2649 ATCAAACGCTTGGCGTCGAAGACGGTGTTGTGAGGGTTCATGGCAACTTGGTTCTTGGCG 2590 Query 8000 GCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGA 8059 || || || || ||||| || | | || || || || ||||| || |||||| || Sbjct 2589 GCATCTCCTATGAGACGCTC---AGTGTCGGTGAAGGCAACGTATGAAGGGGTCACTCTG 2533 Query 8060 TTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTG 8100 || || || ||||| ||||||||||| || | ||| || || Sbjct 2532 TTGCCCTGATCGTTGGCAATAATTTCAACTCTGTCATTCTG 2492 >seq99027 Length=8490 Score = 154 bits (170), Expect = 2e-32 Identities = 454/694 (65%), Gaps = 17/694 (2%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| || || ||||| || | || || || || ||| || ||| ||||| | || Sbjct 5370 ATCAAAGTCCTCACCTCCAAGATGAGTGTCACCGCTGGTGGCCACGACCTCAAACACGCC 5429 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | ||||| | | | || |||||||| ||||| || |||| || | | || | Sbjct 5430 ATCGTCAATCTGAAGAAGGGACACATCAAAGGTACCGCCTCCCAAATCGTACACAAGAAT 5489 Query 7576 GTTCGTATCGTCGT---CTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 |||| | ||| | | | | |||| | || |||||||| || || || || || Sbjct 5490 GTTCTTCTCGCCCTTGACGTCGTTCATG------CCATACGCGATGGCGGCAGCTGTGGG 5543 Query 7633 TTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 || ||||| || || | ||| ||||||||||| || | || || || || ||||| Sbjct 5544 CTCGTTAATGATGCGGACCACGTTGAGGCCAGCAATGGTGCCAGCGTCCTTGGTGGCTTG 5603 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 || ||| | ||||| |||||||| || ||||| | ||| |||| | |||| ||||| || Sbjct 5604 TCTTTGGGCGTCGTTGAAGTAGGCGGGTACCGTGATGACGGCGTTCTTGACCTTCTTGCC 5663 Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGC 7812 | ||| || ||||| || ||||| ||| | | |||||| | ||||| || || | Sbjct 5664 CAAATAGTCCTCTGCGATTTCCTTCATCTTGATCAAAACCATGGCGGAAATTTCCTCGGG 5723 Query 7813 CGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACC 7872 | | | || ||| || || | | ||| || ||| || | | Sbjct 5724 TGAGTAATCCTTGTCTTCGCCCTTGACCTTCACTCTGATGTAGGGCTTGT---TGTCCTT 5780 Query 7873 GGGGATAACCTTATACGACCA-ATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACT 7931 | | ||| | | | ||| ||| |||||||| |||| |||| | ||| || | Sbjct 5781 GTTCACGACCCTGAAGGGCCACATC-TTCATATCAGCTTGAACCTCCTTGTCGTTGAAGT 5839 Query 7932 TTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGT 7991 |||| || || |||||||| | || || || ||||| | ||| || ||||||| || | Sbjct 5840 TTCTGCCAATGAGACGCTTGACGTCGAAGACAGTGTTCTCGGGATTGATGGCTGCCTGAT 5899 Query 7992 TCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGG 8051 ||||||| || || || || | | || | | || || || || ||||| || || | Sbjct 5900 TCTTCGCGGCATCACCAATCAATC--TC-TCTGTGTCAGTGAAGGCCACGTAGGAAGGCG 5956 Query 8052 TCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGA 8111 | | || || ||||| ||||| |||||||| || || || | |||| ||| | || | Sbjct 5957 TGATACGGTTTCCTTGATCGTTGGCAATAATGTCCACACGTCCATTTTTCCAAATTCCAA 6016 Query 8112 CGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 | || ||||||| || ||||| |||||||| Sbjct 6017 CTACAGAGAACGTTGTACCCAAATCGATACCGAT 6050 >seq105396 Length=45554 Score = 152 bits (168), Expect = 7e-32 Identities = 610/954 (64%), Gaps = 11/954 (1%) Strand=Plus/Plus Query 105049 AACACGTCAGCGAGACCCTGAACACCAATACCGATGGGTCTGTGACGCATATTTGAACGT 105108 || |||||||| |||||||| || |||| || || || |||||||| | || || | Sbjct 2818 AAGACGTCAGCAAGACCCTGTACTCCAAGGCCAATAGGCCTGTGACGTCTGTTGGAGTGC 2877 Query 105109 TTCCCGTTTTCGGTTGGGTAAAAGTTTTTATCAATAACCTTGTTTAAGTTACGTGTAACC 105168 | | | | | |||||| |||| || || |||||||| ||||| || || ||| Sbjct 2878 TCGGCTTCTGCAACTGGGTAGTAGTTGACGTCTATTACCTTGTTCAAGTTGCGCGTGACC 2937 Query 105169 ATTTTCGTAACACGATGTAACTCTTCATGGTTAAACTCGTTCTTCTCGACATCAACGTAT 105228 | || || | | || || || | ||| | | ||||| || || ||| Sbjct 2938 ACCTTGACCACCTCAAAGAGCTTCTCGTGATCAAATACCATTTTCTCTTTGTCCACATAT 2997 Query 105229 TTTGGTAACGCGATTGATGCGAGATTACATACGGCGGTTTCTTCC--TTATCCGTAAACT 105286 || || | || ||||| ||||||||||||||||| ||||| | || || |||| Sbjct 2998 TTAGGCAGAGCCATTGAAGCGAGATTACATACGGCCACTTCTTTGGGTGAT--GTGAACT 3055 Query 105287 CCAGAATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCGACT 105346 | |||||| || || | || || ||| ||| || || | ||| | ||||| || | Sbjct 3056 GGACAATTTCAGTGCAAAGGTTGGAACATTGAATGGTGCCGAGGTGCTGGTGGTTGGATT 3115 Query 105347 TTTCATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATTTAA 105406 | | || || || ||||| |||||||| ||||| || || || |||||| || | Sbjct 3116 TCGCGTTGCAGTGATCCTTGTAGAGCATATAAGGGGTACCGGTCTCTATTTGGGCTTCCA 3175 Query 105407 TAATTGCTTTCCAAATCTCCGAAGCTGGTACAACTTTAGTTGCGATACCTTCAGATTCGT 105466 || || ||||| ||| ||| ||| | |||| || || || | Sbjct 3176 AGATGGCAAACCAAAGCTCTTGAGCCTTAACAGCACGTCTTGCACGGCCCTCGCGCTCAT 3235 Query 105467 ATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCTGAT 105526 | ||| || || ||||| || || | |||| |||||| ||||| || Sbjct 3236 AGCGTGTGTACAGCTCCTCAAATTCAGCTCCCCATTTGTCTTGAAGACCTGGTGCCTCAT 3295 Query 105527 CAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGGAA 105586 |||||||||| |||||| | || | | || || | | |||||||| ||| || | Sbjct 3296 TGGGACAAAACAGTGACCAGTCTCCTCCTGCCTCCACTCTCTCCATGAACAGATCGGGTA 3355 Query 105587 TCCACATGGCTGAAAAGAGGTCTCGACACCTCGC--CTCTTCATCACCTTGATTCAAACG 105644 ||||| || ||||| |||| ||||| |||||| | || || ||| Sbjct 3356 CCCACAGAGCATGGAAGAGATCTCTGG--CTCGCTGCTCTTCCTTGCCGTGGTTCTTTTT 3413 Query 105645 AATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGC-AATAGACC 105703 | || | ||| || | || || |||||||| || || | ||||| ||| ||| || Sbjct 3414 CAGCTCCAAAAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCGAATGCTCC 3473 Query 105704 CTTTACGACGCCCCG--CTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTAACAT 105761 ||| ||| | |||||| || || | ||| || || |||||||| | ||| Sbjct 3474 CTTCCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCATTGTACACTCGCAGCAT 3533 Query 105762 TGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCACGTAC 105821 |||||| | ||| | ||| || || || || || | || | || || ||||| | Sbjct 3534 TGGAATGAGACCGTTGGACGTGCCGTTGGTGCCCCTGATGTACGAGTTGGCAGCACGAAT 3593 Query 105822 ATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTTTTAC 105881 | ||| || | ||||| || || || | |||| || || |||| ||| | Sbjct 3594 TTTGTGCACACTAAGACCAATTCCTCCGGCGCTCTTAGAAATCAAGGCGCACTGTTTAAG 3653 Query 105882 TGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGACAT 105941 || ||||| || || || || || ||||| | | || ||||| ||||| || | Sbjct 3654 CGTGTCGTATATCCCTTCTATGCTGTCTTCTTGCATGTTAACGAGGAAGCACGAAGAAAG 3713 Query 105942 TTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAA 105995 |||||||| || || ||||||||||| || || || || |||||| |||| || Sbjct 3714 TTGTGGTCGTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGTGAATAA 3767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634277641319760