Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq105396 163 4e-35 seq104633 111 2e-19 seq99766 111 2e-19 seq99765 111 2e-19 seq96527 107 2e-18 >seq105396 Length=45554 Score = 163 bits (180), Expect = 4e-35 Identities = 700/1084 (65%), Gaps = 37/1084 (3%) Strand=Plus/Minus Query 111924 GGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGG 111983 ||| | ||||||||||| || || | || | |||||| ||||| ||| | |||| ||| Sbjct 3545 GGTCTCATTCCAATGCTGCGAGTGTACAATGACACAGCACGCTACGTAGATCAAGGTGGT 3486 Query 111984 CGTC---GCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAG 112040 | | |||||| | ||||| ||||||| ||||| ||||||||||| ||| | ||| Sbjct 3485 GGCAAGAGGAAGGGAGCATTCGCAATCTATCTGGAGCCTTGGCACGCGGACATCTTTGAG 3426 Query 112041 TTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCC 112100 || | ||| || ||||| || | || ||| ||| | | ||||||||| Sbjct 3425 TTTTTGGAGCTGAAAAAGAACCACGGCAAGGAAGAGCAGCGAGCCAGAGATCTCTTCCAT 3366 Query 112101 GCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTC 112160 ||||| ||| | || ||||| |||||| ||||||| |||| | || | ||||| || Sbjct 3365 GCTCTGTGGGTACCCGATCTGTTCATGGAGAGAGTGGAGGCAGGAGGAGACTGGTCACTG 3306 Query 112161 TTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCC--GTGGGTGAG--GAGTTTGAAGC 112216 |||||||| | ||||||| ||||| || | | | |||| ||| || ||||| | Sbjct 3305 TTTTGTCCCAATGAGGCACCAGGTCT-TC--AAGACAAATGGG-GAGCTGAATTTGAGGA 3250 Query 112217 CCTCTACACAAAGTACGAGGAAGAAAGTCGGGC--GACTGCGACGGTGCCAGCTGCCGAT 112274 || |||||| || ||| || | || || ||| | | | || ||| || Sbjct 3249 GCTGTACACACGCTATGAGCGCGAGGGCCGTGCAAGAC-GTG-CTGTTAAGGCTCAAGAG 3192 Query 112275 GTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAA 112334 | ||| || || | | | |||| ||||| ||||| || |||||||| ||||| Sbjct 3191 CTTTGGTTTGCCATCTTGGAAGCCCAAATAGAGACCGGTACCCCTTATATGCTCTACAAG 3132 Query 112335 GACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTC 112394 || ||| ||| || || || || | | || || | |||||||||| Sbjct 3131 GATCACTGCAACGCGAAATCCAACCACCAGCACCTCGGCACCATTCAATGTTCCAACCTT 3072 Query 112395 TGTACAGAAATCTTGGAATTTA---CAGACAAAGATGAGACGGCTGTGTGTAACCTCGCA 112451 || || ||||| | | || | || |||||| | ||| || ||||| ||||| Sbjct 3071 TGCACTGAAATTGTCCAGTTCACATCACCCAAAGAAG---TGGCCGTATGTAATCTCGCT 3015 Query 112452 TCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTC 112511 ||||| ||||| || || |||||||| ||||| || | ||||||| | || || ||| Sbjct 3014 TCAATGGCTCTGCCTAAATATGTGGACAAAGAGAAAATGGTATTTGATCACGAGAAGCTC 2955 Query 112512 CACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTAC 112571 || || || ||||| ||| | |||| || || || || | ||| Sbjct 2954 TTTGAGGTGGTCAAGGTGGTCACGCGCAACTTGAACAAGGTAATAGACGTCAACTACTAC 2895 Query 112572 CCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCA 112630 || |||| ||| || | || || | | ||| | || ||||| || || || || Sbjct 2894 CCAGTTGCAGA-AGCCGAGCACTCCAACAGACGTCACAGGCCTATTGGCCTTGGAGTACA 2836 Query 112631 AGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATT-TGATTCCGACGAAGCGAAGG 112689 ||||| || || || ||| |||| | || || || || || ||| || || | Sbjct 2835 GGGTCTTGCTGACGTCTTCCTTCTCTTGCG-CATGCCTTGGGACAGCGAAGAGGCACGCG 2777 Query 112690 AAATCAATGCGCG-TATATTTGAGACAATGTATCACGCCGCTCT----TGAGGCGAGTTC 112744 |||| |||| || || |||||||| ||| |||||||| | | | | Sbjct 2776 CCCTCAA-CCGCGACATTTTCGAGACAATCTATTTTGCCGCTCTCACATCATCCAA---- 2722 Query 112745 GGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGG 112804 ||| ||||| ||| | || || || || |||| || |||||| | |||| Sbjct 2721 CGAGCTGGCAAAGGAGCAAGGGCCCTACCCCACATTTGCCGGCTCTCCAACGAGCAAAGG 2662 Query 112805 GGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT-TCACTACGACTGGGACGCTC 112863 | || || |||||||||||| | | |||| ||| || | | || |||| | | | Sbjct 2661 CATACTACAGTTTGATATGTGGAATGTTGAG-CCATCCTCCCGTTGGGATTGGGCCTCCC 2603 Query 112864 TCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAA 112923 |||||| | |||| || | ||||| || ||||| | || | ||||| ||||| | Sbjct 2602 TCAAGGCAAGCATTGTAGAACACGGTCTGCGCAACAGCTTGCTGGTTGCACCTATGCCGA 2543 Query 112924 CAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACA 112983 | || || || | || || | || || ||||| |||||||| || ||||| | || | Sbjct 2542 CGGCTTCTACTTCCCAGATACTAGGCAACAATGAGTGCTTTGAGCCTTACACTTCTAATA 2483 Query 112984 TCTA 112987 |||| Sbjct 2482 TCTA 2479 >seq104633 Length=6721 Score = 111 bits (122), Expect = 2e-19 Identities = 162/226 (72%), Gaps = 5/226 (2%) Strand=Plus/Plus Query 102078 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGAT 102137 |||||| | || ||||| | |||||| | || || || | | | | |||||||| ||| Sbjct 2153 GAGAAGGATCATCTCTTCAATGCCATCGATACTGTGCCTTCTGTCAAGAAGAAAGCTGAT 2212 Query 102138 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTC---CTTTGC-TGAGCGACTCTTCGC 102193 |||||| | || ||| |||| | | ||| || | |||| | |||| || | | || Sbjct 2213 TGGGCTCTCAAATGGATTGAAA-AGAGTGGCACTGACACTTTCCCTGAGAGATTGGTTGC 2271 Query 102194 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 102253 ||| || || || || |||||||||||||| |||||| | || | ||||||||| Sbjct 2272 ATTCGCCGCCGTGGAAGGCATCTTCTTCTCTGGAAGCTTCTGTTCCATCTTTTGGCTCAA 2331 Query 102254 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 |||| | || |||||||| || ||||||||| ||| ||| | ||| Sbjct 2332 GAAGAGGGGCCTCATGCCTGGCCTCTGCTTCAGCAATGAGTTGATC 2377 >seq99766 Length=6639 Score = 111 bits (122), Expect = 2e-19 Identities = 162/226 (72%), Gaps = 5/226 (2%) Strand=Plus/Plus Query 102078 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGAT 102137 |||||| | || ||||| | |||||| | || || || | | | | |||||||| ||| Sbjct 1208 GAGAAGGATCATCTCTTCAATGCCATCGATACTGTGCCTTCTGTCAAGAAGAAAGCTGAT 1267 Query 102138 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTC---CTTTGC-TGAGCGACTCTTCGC 102193 |||||| | || ||| |||| | | ||| || | |||| | |||| || | | || Sbjct 1268 TGGGCTCTCAAATGGATTGAAA-AGAGTGGCACTGACACTTTCCCTGAGAGATTGGTTGC 1326 Query 102194 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 102253 ||| || || || || |||||||||||||| |||||| | || | ||||||||| Sbjct 1327 ATTCGCCGCCGTGGAAGGCATCTTCTTCTCTGGAAGCTTCTGTTCCATCTTTTGGCTCAA 1386 Query 102254 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 |||| | || |||||||| || ||||||||| ||| ||| | ||| Sbjct 1387 GAAGAGGGGCCTCATGCCTGGCCTCTGCTTCAGCAATGAGTTGATC 1432 >seq99765 Length=6612 Score = 111 bits (122), Expect = 2e-19 Identities = 162/226 (72%), Gaps = 5/226 (2%) Strand=Plus/Plus Query 102078 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGAT 102137 |||||| | || ||||| | |||||| | || || || | | | | |||||||| ||| Sbjct 1208 GAGAAGGATCATCTCTTCAATGCCATCGATACTGTGCCTTCTGTCAAGAAGAAAGCTGAT 1267 Query 102138 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTC---CTTTGC-TGAGCGACTCTTCGC 102193 |||||| | || ||| |||| | | ||| || | |||| | |||| || | | || Sbjct 1268 TGGGCTCTCAAATGGATTGAAA-AGAGTGGCACTGACACTTTCCCTGAGAGATTGGTTGC 1326 Query 102194 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 102253 ||| || || || || |||||||||||||| |||||| | || | ||||||||| Sbjct 1327 ATTCGCCGCCGTGGAAGGCATCTTCTTCTCTGGAAGCTTCTGTTCCATCTTTTGGCTCAA 1386 Query 102254 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 |||| | || |||||||| || ||||||||| ||| ||| | ||| Sbjct 1387 GAAGAGGGGCCTCATGCCTGGCCTCTGCTTCAGCAATGAGTTGATC 1432 >seq96527 Length=155711 Score = 107 bits (118), Expect = 2e-18 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263 || ||||| |||||||| ||||| |||||| || ||||||||| ||||||||||||| Sbjct 54012 GTCGAGGGCATCTTCTTTTCTGGAAGCTTCTGTGCCATTTATTGGATCAAGAAGCGAGGC 53953 Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||||||| || ||| | ||||||||||| ||||| | | || ||||| |||||| Sbjct 53952 ATCATGCCTGGCCTCACCCTCTCCAACGAGTTTATCGCCAGAGATGAGGGCCTCCAC 53896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619906616914080