Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq105396 192 7e-44 seq104633 132 6e-26 seq99766 132 6e-26 seq99765 132 6e-26 seq96527 84.2 3e-11 >seq105396 Length=45554 Score = 192 bits (212), Expect = 7e-44 Identities = 872/1359 (64%), Gaps = 44/1359 (3%) Strand=Plus/Plus Query 109703 CAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAG 109762 |||| || | ||||| ||| ||| || ||||| | |||| | |||||| |||| Sbjct 2430 CAAG-TGTTCGTTGATCACCGTAAAGTCTCCAGCCAAGATGCGCCTTGTGTAGATATTAG 2488 Query 109763 TCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCA 109822 ||||| || || || ||||||||||||||||| || || | ||| ||||| || |||| Sbjct 2489 AAGTGTAAGGCTCAAAGCACTCATTGTTGCCTAGTATCTGGGAAGTAGAAGCCGTCGGCA 2548 Query 109823 TGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCC-GCTCACGCATTGCG 109881 | || || | || | ||||| || ||||| | || | ||| ||| || ||| | Sbjct 2549 TAGGTGCAACCAGCAAGCTGTTGCGCAGACCGT--GT-TCTACAATGCTT--GCCTTGAG 2603 Query 109882 T----CCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAG 109937 ||||||| |||| || | |||| ||| ||||||||| || || Sbjct 2604 GGAGGCCCAATCCCAACGGGAGG---AT---GGCTCAACATTCCACATATCAAACTGTAG 2657 Query 109938 TACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAA 109997 || || | | ||||| || || | ||| | ||| | ||| |||| Sbjct 2658 TATGCCTTTGCTCGTTGGAGAGCCGGCAAATGTGGGGTAGGGCCCTTGCTCCTTTGCCAG 2717 Query 109998 CTCG---GATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCAT 110054 |||| ||||| | || || ||| ||| || ||||| ||||| | || | Sbjct 2718 CTCGTTGGATGATGTG---AGAGCGGCAAAATAGATTGTCTCGAAAATGTCGCGGTTGAG 2774 Query 110055 GAGGCGAGACTCTTCACAGTCG-AAGGGAAGACCACAAAGAATAAACACATCCGCTAGAC 110113 | ||| | |||||| | ||| |||| | | || | |||| || || || || |||| Sbjct 2775 GGCGCGTGCCTCTTCGCTGTCCCAAGGCATGCGCA-AGAGAAGGAAGACGTCAGCAAGAC 2833 Query 110114 CCTGAACACCGAGACCAATGGGGCGATG-CTTCATGTTAGAGCG-TCGAGCAGTTTCTAC 110171 |||| || || || ||||| || | || | || |||| ||| | ||| || | | || Sbjct 2834 CCTGTACTCCAAGGCCAATAGGCCTGTGACGTC-TGTTGGAGTGCTCG-GCTTCTGCAAC 2891 Query 110172 GGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTC 110231 ||||| ||||| ||| || ||| || | || ||| || ||| | || Sbjct 2892 TGGGTAGTAGTTGACGTCTATTACCTTGTTCAAGTTGCGCGTGACCACCTTGACCACCTC 2951 Query 110232 ATGGAGTTTGTCGTAATCGAA--CGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCA 110289 | ||| || |||| ||| || | ||| |||| || | |||||||| || ||||| Sbjct 2952 AAAGAGCTTCTCGTGATCAAATACCATTT--TCTCTTTGTCCACATATTTAGGCAGAGCC 3009 Query 110290 ATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGG---TGTATTCCAAAATTTCC 110346 || || || ||||| || || | | | |||||| | || | | | |||||| Sbjct 3010 ATTGAAGCGAGATTACATACGGC---CACTTCTTTGGGTGATGTGAACTGGACAATTTCA 3066 Query 110347 GTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCAT 110406 || || | |||||||| | |||| || | || || || || ||||| | |||||| Sbjct 3067 GTGCAAAGGTTGGAACATTGAATGGTGCCGAGGTGCTGGTGGTTGGATTTCGCGTTGCAG 3126 Query 110407 GCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTC 110466 |||||| |||||||| || |||||||| || || | || | | | ||||| | Sbjct 3127 TGATCCTTGTAGAGCATATAAGGGGTACCGGTCTCTATTTGGGCTTCCAAGATGGCAAAC 3186 Query 110467 CATACATCGGCGGCGGGGACAGTTGCGT-TAGCGAGACCTTCCTCCTCGTACTTGGTGTA 110525 || | || || |||| ||| | || | || || ||| || ||||| Sbjct 3187 CAAAGCTCTTGAGCCTTAACAGCA-CGTCTTGCACGGCCCTCGCGCTCATAGCGTGTGTA 3245 Query 110526 CAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAA 110585 || ||||||||||| ||| | || |||||| |||| | |||||| || Sbjct 3246 CAGCTCCTCAAATTCAGCTCCCCATTTGTCTTGAAGACCTGGTGCCTCATTGGGACAAAA 3305 Query 110586 GAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGC 110645 || ||||| | ||| || |||| || |||| ||||||||| || || | ||||| || Sbjct 3306 CAGTGACCAGTCTCCTCCTGCCTCCACTCTCTCCATGAACAGATCGGGTACCCACAGAGC 3365 Query 110646 CGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAA 110705 ||| || || | | || |||||| | || ||||| ||||||||||| Sbjct 3366 ATGGAAGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGTTCTTTTTCAGCTCCAAAAA 3425 Query 110706 GTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTAC---GACG 110762 || | ||| |||| |||||| || || ||||||| |||| | |||||| | | Sbjct 3426 CTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCGAATGCTCCCTTCCTCTTGCC 3485 Query 110763 ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCC 110822 ||| | || | || |||||||||||| ||||| | || | ||||| ||||| | || Sbjct 3486 ACCACCTTGATCTACGTAGCGTGCTGTGTCATTGTACACTCGCAGCATTGGAATGAGACC 3545 Query 110823 ATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATG 110882 | ||| || || || ||||| || || || |||||||| | ||| | | Sbjct 3546 GTTGGACGTGCCGTTGGTGCCCCTGATGTACGAGTTGGCAGCACGAATTTTGTGCACACT 3605 Query 110883 CATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAAT 110942 | |||||| || || || | |||| ||| || |||| | | || || | || || Sbjct 3606 AAGACCAATTCCTCCGGCGCTCTTAGAAATCAAGGCGCACTGTTTAAGCGTGTCGTATAT 3665 Query 110943 ACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGG 111002 || || || ||| | | || || || ||||| ||||| | || || || || Sbjct 3666 CCCTTCTATGCTGTCTTCTTGCATGTTAACGAGGAAGCACGAAGAAAGTTGTGGTCGTGG 3725 Query 111003 CGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAA 111041 ||| || |||||||| ||||| || || |||||| |||| Sbjct 3726 CGTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGTGAA 3764 >seq104633 Length=6721 Score = 132 bits (146), Expect = 6e-26 Identities = 185/258 (72%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || |||||| || ||||| | ||| | |||||| |||||||| || || Sbjct 2410 GGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGGCC 2351 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||||||| || || ||||| ||||||||||||| ||| || |||||||| |||||||| Sbjct 2350 AGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTTCCAGAGAAGAAGAT 2291 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAG-GT-----CGAGACTTGTC 119668 ||| ||||| |||||| || | | | ||||| |||| || | | ||| || Sbjct 2290 GCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCAGTGCCACTCTTTTC 2231 Query 119669 GAACCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTC 119728 | ||| ||||||||||| | || || || | | || ||||| | |||||| | Sbjct 2230 AATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATCGATGGCATT 2171 Query 119729 GAAAAGTTGCTTCTTTTC 119746 ||| || || | ||| || Sbjct 2170 GAAGAGATGATCCTTCTC 2153 >seq99766 Length=6639 Score = 132 bits (146), Expect = 6e-26 Identities = 185/258 (72%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || |||||| || ||||| | ||| | |||||| |||||||| || || Sbjct 1465 GGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGGCC 1406 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||||||| || || ||||| ||||||||||||| ||| || |||||||| |||||||| Sbjct 1405 AGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTTCCAGAGAAGAAGAT 1346 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAG-GT-----CGAGACTTGTC 119668 ||| ||||| |||||| || | | | ||||| |||| || | | ||| || Sbjct 1345 GCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCAGTGCCACTCTTTTC 1286 Query 119669 GAACCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTC 119728 | ||| ||||||||||| | || || || | | || ||||| | |||||| | Sbjct 1285 AATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATCGATGGCATT 1226 Query 119729 GAAAAGTTGCTTCTTTTC 119746 ||| || || | ||| || Sbjct 1225 GAAGAGATGATCCTTCTC 1208 >seq99765 Length=6612 Score = 132 bits (146), Expect = 6e-26 Identities = 185/258 (72%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || |||||| || ||||| | ||| | |||||| |||||||| || || Sbjct 1465 GGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGGCC 1406 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||||||| || || ||||| ||||||||||||| ||| || |||||||| |||||||| Sbjct 1405 AGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTTCCAGAGAAGAAGAT 1346 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAG-GT-----CGAGACTTGTC 119668 ||| ||||| |||||| || | | | ||||| |||| || | | ||| || Sbjct 1345 GCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCAGTGCCACTCTTTTC 1286 Query 119669 GAACCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTC 119728 | ||| ||||||||||| | || || || | | || ||||| | |||||| | Sbjct 1285 AATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATCGATGGCATT 1226 Query 119729 GAAAAGTTGCTTCTTTTC 119746 ||| || || | ||| || Sbjct 1225 GAAGAGATGATCCTTCTC 1208 >seq96527 Length=155711 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 119463 GGTTTGTTTCTCAAGAGTTTAAACAACTCTACGGCAAATTCTTGATGAAGCCCTTCATCC 119522 || |||||| ||| | ||| || | | | |||||||| || || || ||||| Sbjct 53852 GGCTTGTTTTCCAACATTTTGAAGAGCAAGATGGCAAATTTACAGTGGAGGCCCTCATCT 53911 Query 119523 CGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTTAGCCAA 119582 | | ||| | ||| || || | || |||||||||| |||| ||||| | |||| Sbjct 53912 CTGGCGATAAACTCGTTGGAGAGGGTGAGGCCAGGCATGATGCCTCGCTTCTTGATCCAA 53971 Query 119583 AAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCAC 119623 | |||||||| || ||||||||||||||||||||||| || Sbjct 53972 TAAATGGCACAGAAGCTTCCAGAAAAGAAGATGCCCTCGAC 54012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588182987989200