Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq105396 136 5e-27 seq104633 87.8 2e-12 seq99766 87.8 2e-12 seq99765 87.8 2e-12 >seq105396 Length=45554 Score = 136 bits (150), Expect = 5e-27 Identities = 578/902 (64%), Gaps = 37/902 (4%) Strand=Plus/Plus Query 106437 TCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCAT 106496 |||||| | ||||| || || || || ||||| || | ||| || || ||| || | Sbjct 2981 TCTCTTTGTCCACATATTTAGGCAGAGCCATTGAAGCGAGATTACATACGGCCACTTCTT 3040 Query 106497 CCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAAT 106556 |||| ||| | |||||| || || | |||||||| | ||| || || | | Sbjct 3041 TGGGTGATGTGAACTGGACAATTTCAGTGCAAAGGTTGGAACATTGAATGGTGCCGAGGT 3100 Query 106557 TCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCT 106616 || ||||| || |||||| ||||||||||||||| || || || || |||| Sbjct 3101 GCTGGTGGTTGGATTTCGCGTTGCAGTGATCCTTGTAGAGCATATAAGGGGTACCGGTCT 3160 Query 106617 CCGTCTGTGACTTGAGAATTGCCTTCCACACATCG-GCGGCTGGTACAATGGCGT-TGGC 106674 | | || | | | || || ||| | || | | || || | ||| | || Sbjct 3161 CTATTTGGGCTTCCAAGATGGCAAACCAAAGCTCTTGAGCCT--TAACAGCACGTCTTGC 3218 Query 106675 CCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGA 106734 || ||||| ||| || |||||| || | ||||| || | ||| ||| Sbjct 3219 ACGGCCCTCGCGCTCATAGCGTGTGTACAGCTCCTCAAATTCAGCTCCCCATTTGTCTTG 3278 Query 106735 GAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTT 106794 ||||||||||||| | ||||| || || ||||| | || || |||| || | || Sbjct 3279 AAGACCTGGTGCCTCATTGGGACAAAACAGTGACCAGTCTCCTCCTGCCTCCACTCTCTC 3338 Query 106795 CATGAAAAGGTCTGGAATCCACAG-GGATGAAAAGAGATCTCTACACCGAGCCTCTTCGT 106853 |||||| || || || | |||||| | ||| ||||||||||| || |||||| | Sbjct 3339 CATGAACAGATCGGGTACCCACAGAGCATG-GAAGAGATCTCTGGCTCGCTGCTCTTCCT 3397 Query 106854 CACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGAT 106913 || ||||| | | ||| | ||||| | ||| ||||||||||| ||||| |||| Sbjct 3398 TGCCGTGGTTCTTTTTCAGCTCCAAAAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGAT 3457 Query 106914 AGACTGCGATAGATCCCTTTC---GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGT 106970 ||| ||||| | |||||| | | ||| |||||| ||| ||||| |||||| | | Sbjct 3458 AGATTGCGAATGCTCCCTTCCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCAT 3517 Query 106971 TAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-ATACG 107028 | | || || ||||||||||| | ||| | || || || || |||| || |||| Sbjct 3518 TGTACACTCGCAGCATTGGAATGAGACCGTTGGACGTGCCGTTGGTGCCCCTGATGTACG 3577 Query 107029 AGATTTATTGGCTCTCACATCATGGA---TGTGC------ATCCCAATACCCCCAGCCCA 107079 || |||| || || | | ||||| | ||||| || || || | Sbjct 3578 AG-----TTGG------CAGCACGAATTTTGTGCACACTAAGACCAATTCCTCCGGCGCT 3626 Query 107080 CTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTC--- 107136 ||| || || || |||| |||| || | || || || | || ||| || Sbjct 3627 CTTAGAAATCAAGGCGCACTGTTTAAGCGTGTCGTATATCCCTTCTATGCTGTCTTCTTG 3686 Query 107137 CTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAG 107196 | |||| || |||||||| || | || |||| ||| || ||||||||||| || Sbjct 3687 CATGTTAACG---AGGAAGCACGAAGAAAGTTGTGGTCGTGGCGTGCCAGCATTGAAAAG 3743 Query 107197 GGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGA 107256 || || || || ||| |||| | ||| || || | || |||||||| |||| Sbjct 3744 TGTGGGAGTGGCATGAGTGAATAATTGTTGAGAGATAAGATTATACGTCTCCAATACAGC 3803 Query 107257 ATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTC 107316 ||||| | ||| | || | || || ||||| ||||||| |||||| | || Sbjct 3804 TCTGATGTCAGTCTTGTGCAGTCCTACAGCAACTCGCATCAACATGTGTTGGGGCCTCTC 3863 Query 107317 CA 107318 || Sbjct 3864 CA 3865 >seq104633 Length=6721 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/238 (68%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || || || |||||||||| | || | ||||| |||||| ||||| Sbjct 2410 GGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGGCC 2351 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 |||||||| |||| |||||| | |||| | || | ||||| || ||||||||||| Sbjct 2350 AGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTTCCAGAGAAGAAGAT 2291 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG----AGCGAGACTTTGTGT 117448 || ||||| || || |||| | | ||| | ||| | || | ||| | | | Sbjct 2290 GCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCAGTGCCACTCT-TTT 2232 Query 117449 CAAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 ||| |||||| | ||||| | || ||||||| | | | || ||||| | |||||| Sbjct 2231 CAATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATCGATGGC 2174 >seq99766 Length=6639 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/238 (68%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || || || |||||||||| | || | ||||| |||||| ||||| Sbjct 1465 GGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGGCC 1406 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 |||||||| |||| |||||| | |||| | || | ||||| || ||||||||||| Sbjct 1405 AGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTTCCAGAGAAGAAGAT 1346 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG----AGCGAGACTTTGTGT 117448 || ||||| || || |||| | | ||| | ||| | || | ||| | | | Sbjct 1345 GCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCAGTGCCACTCT-TTT 1287 Query 117449 CAAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 ||| |||||| | ||||| | || ||||||| | | | || ||||| | |||||| Sbjct 1286 CAATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATCGATGGC 1229 >seq99765 Length=6612 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/238 (68%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || || || |||||||||| | || | ||||| |||||| ||||| Sbjct 1465 GGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGGCC 1406 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 |||||||| |||| |||||| | |||| | || | ||||| || ||||||||||| Sbjct 1405 AGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTTCCAGAGAAGAAGAT 1346 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG----AGCGAGACTTTGTGT 117448 || ||||| || || |||| | | ||| | ||| | || | ||| | | | Sbjct 1345 GCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCAGTGCCACTCT-TTT 1287 Query 117449 CAAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 ||| |||||| | ||||| | || ||||||| | | | || ||||| | |||||| Sbjct 1286 CAATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATCGATGGC 1229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589186435101360