Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq104633 152 6e-32 seq99766 152 6e-32 seq99765 152 6e-32 >seq104633 Length=6721 Score = 152 bits (168), Expect = 6e-32 Identities = 371/559 (66%), Gaps = 5/559 (1%) Strand=Plus/Minus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||| ||||| || ||||| || ||||| ||||| || ||||| ||||| || | Sbjct 2413 ACAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAG 2354 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079 |||||||| || || || || || | ||| || || ||| || |||||| ||||| Sbjct 2353 GCCAGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTTCCAGAGAAGAA 2294 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCAT---CATTATT 19136 || ||||| || || || || ||||| | ||| || || | || || | || Sbjct 2293 GATGCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCAGTGCCACTCTT 2234 Query 19137 ATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGA 19196 | ||||||||| || ||||||||||| ||||| || ||| | |||| || || || | Sbjct 2233 TTCAATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATCGATGGC 2174 Query 19197 ATTAAATAGATACATAC-GCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGT 19255 ||| || |||| || | ||| | || || || || | || ||||| | | Sbjct 2173 ATTGAAGAGAT-GATCCTTCTCGACGTGGTCCTTCACGTAGGTGTCGATCAAGAGGGAAT 2115 Query 19256 ACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTG 19315 ||||||| || ||||| || || || || |||||||| ||||| || || | || || | Sbjct 2114 ACATTTCCGAGTGAATGTTCTCAATGGCAATCTGAAAGCCGTAGAAGCAGCGAGCCTCAG 2055 Query 19316 TTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAG 19375 ||||| | || | || | | |||| || ||| | || || |||||| | Sbjct 2054 GAATCTGAATCTCTGTCATGAAGCGCCCAGCCAAGTTCTCAGTCACAATGCCATCAGAGG 1995 Query 19376 CTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCC 19435 | ||||| || || || ||| ||||| || || | ||||| || || | | ||| Sbjct 1994 CAGCAAAGAAGGCCAACACAGACTTAATGAAGTGCCTCTCATCAGAAGTAAGAGAGCTCC 1935 Query 19436 AATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTT 19495 ||| || ||| || | || || ||||| ||||||| || || ||||| || | Sbjct 1934 AATGGTTGTGATCGGAAGCCAGGTCGACCTCTTCGGCTGTCCAGAAGGAGGCCTCAGCCT 1875 Query 19496 TTTTATACATGTTCCATAT 19514 |||| ||||| | ||| || Sbjct 1874 TTTTGTACATCTCCCAAAT 1856 >seq99766 Length=6639 Score = 152 bits (168), Expect = 6e-32 Identities = 371/559 (66%), Gaps = 5/559 (1%) Strand=Plus/Minus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||| ||||| || ||||| || ||||| ||||| || ||||| ||||| || | Sbjct 1468 ACAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAG 1409 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079 |||||||| || || || || || | ||| || || ||| || |||||| ||||| Sbjct 1408 GCCAGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTTCCAGAGAAGAA 1349 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCAT---CATTATT 19136 || ||||| || || || || ||||| | ||| || || | || || | || Sbjct 1348 GATGCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCAGTGCCACTCTT 1289 Query 19137 ATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGA 19196 | ||||||||| || ||||||||||| ||||| || ||| | |||| || || || | Sbjct 1288 TTCAATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATCGATGGC 1229 Query 19197 ATTAAATAGATACATAC-GCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGT 19255 ||| || |||| || | ||| | || || || || | || ||||| | | Sbjct 1228 ATTGAAGAGAT-GATCCTTCTCGACGTGGTCCTTCACGTAGGTGTCGATCAAGAGGGAAT 1170 Query 19256 ACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTG 19315 ||||||| || ||||| || || || || |||||||| ||||| || || | || || | Sbjct 1169 ACATTTCCGAGTGAATGTTCTCAATGGCAATCTGAAAGCCGTAGAAGCAGCGAGCCTCAG 1110 Query 19316 TTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAG 19375 ||||| | || | || | | |||| || ||| | || || |||||| | Sbjct 1109 GAATCTGAATCTCTGTCATGAAGCGCCCAGCCAAGTTCTCAGTCACAATGCCATCAGAGG 1050 Query 19376 CTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCC 19435 | ||||| || || || ||| ||||| || || | ||||| || || | | ||| Sbjct 1049 CAGCAAAGAAGGCCAACACAGACTTAATGAAGTGCCTCTCATCAGAAGTAAGAGAGCTCC 990 Query 19436 AATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTT 19495 ||| || ||| || | || || ||||| ||||||| || || ||||| || | Sbjct 989 AATGGTTGTGATCGGAAGCCAGGTCGACCTCTTCGGCTGTCCAGAAGGAGGCCTCAGCCT 930 Query 19496 TTTTATACATGTTCCATAT 19514 |||| ||||| | ||| || Sbjct 929 TTTTGTACATCTCCCAAAT 911 >seq99765 Length=6612 Score = 152 bits (168), Expect = 6e-32 Identities = 371/559 (66%), Gaps = 5/559 (1%) Strand=Plus/Minus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||| ||||| || ||||| || ||||| ||||| || ||||| ||||| || | Sbjct 1468 ACAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAG 1409 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079 |||||||| || || || || || | ||| || || ||| || |||||| ||||| Sbjct 1408 GCCAGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTTCCAGAGAAGAA 1349 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCAT---CATTATT 19136 || ||||| || || || || ||||| | ||| || || | || || | || Sbjct 1348 GATGCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCAGTGCCACTCTT 1289 Query 19137 ATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGA 19196 | ||||||||| || ||||||||||| ||||| || ||| | |||| || || || | Sbjct 1288 TTCAATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATCGATGGC 1229 Query 19197 ATTAAATAGATACATAC-GCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGT 19255 ||| || |||| || | ||| | || || || || | || ||||| | | Sbjct 1228 ATTGAAGAGAT-GATCCTTCTCGACGTGGTCCTTCACGTAGGTGTCGATCAAGAGGGAAT 1170 Query 19256 ACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTG 19315 ||||||| || ||||| || || || || |||||||| ||||| || || | || || | Sbjct 1169 ACATTTCCGAGTGAATGTTCTCAATGGCAATCTGAAAGCCGTAGAAGCAGCGAGCCTCAG 1110 Query 19316 TTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAG 19375 ||||| | || | || | | |||| || ||| | || || |||||| | Sbjct 1109 GAATCTGAATCTCTGTCATGAAGCGCCCAGCCAAGTTCTCAGTCACAATGCCATCAGAGG 1050 Query 19376 CTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCC 19435 | ||||| || || || ||| ||||| || || | ||||| || || | | ||| Sbjct 1049 CAGCAAAGAAGGCCAACACAGACTTAATGAAGTGCCTCTCATCAGAAGTAAGAGAGCTCC 990 Query 19436 AATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTT 19495 ||| || ||| || | || || ||||| ||||||| || || ||||| || | Sbjct 989 AATGGTTGTGATCGGAAGCCAGGTCGACCTCTTCGGCTGTCCAGAAGGAGGCCTCAGCCT 930 Query 19496 TTTTATACATGTTCCATAT 19514 |||| ||||| | ||| || Sbjct 929 TTTTGTACATCTCCCAAAT 911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561351962658960