Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq105396 163 5e-35 seq104633 161 2e-34 seq99766 161 2e-34 seq99765 161 2e-34 >seq105396 Length=45554 Score = 163 bits (180), Expect = 5e-35 Identities = 533/808 (66%), Gaps = 45/808 (6%) Strand=Plus/Plus Query 221486 GGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTG 221545 ||||| |||| | | |||||||| || || ||||||||||| | || || |||||| Sbjct 2800 GGCATGCGCAAGAGAAGGAAGACGTCAGCAAGACCCTGTACTCCAAGGCCAATAGGCCTG 2859 Query 221546 TGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTG 221605 || | |||||||| | ||||||| || || || |||||||||| || | ||| Sbjct 2860 TGACGTCTGTTGGAGTGCTCGGCTTCTGCAACTGGGTAGTAGTTGACGTCTATTACCTTG 2919 Query 221606 TTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAAC 221665 || | ||| | |||| || || |||||||| ||||||| ||||| || |||| Sbjct 2920 TTCAAGTTGCGCGTGACCACCTTGACCACCTCAAAGAGCTTCTCGTGATCAAATACCATT 2979 Query 221666 TCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC---TG--GCCAGGT 221720 | || | | |||||| | |||||| || || || || || | Sbjct 2980 TTC------TCTTTG------TCCACATA----TTTAGG-CAGAGCCATTGAAGCGAGAT 3022 Query 221721 TACACACGGCCACCTCGTCCTTGTTGGTAT--ACTGTATGATCTCTGTACAGAGGTTGCT 221778 |||| |||||||| || | | | || | | |||| | || || || || |||||| Sbjct 3023 TACATACGGCCACTTCTT--TGGGTGATGTGAACTGGACAATTTCAGTGCAAAGGTTGGA 3080 Query 221779 GCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCCTTGTAGA 221837 || | ||||| || ||||| | ||| || || || || | |||| | |||||||||| Sbjct 3081 ACATTGAATGGTGCCGAGGTGCTGGTGGTTGGATTT-CGCGTTGCAGTGATCCTTGTAGA 3139 Query 221838 GCATA-AAGGG--ACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTC 221894 ||||| ||||| |||| ||||| | || || ||| || ||| || ||| Sbjct 3140 GCATATAAGGGGTACCG---GTCTCTATTTGGGCTTCCAAGATGGCAAACCAAAGCTCTT 3196 Query 221895 TGGCGCTCACCGTCC-TCTTG-ACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCAT 221952 || | || | | ||||| || || ||||| || |||| | || || ||| Sbjct 3197 GAGCCTTAACAGCACGTCTTGCACGGC--CCTCGCGCT---CATAGCGTGTGTACAGCTC 3251 Query 221953 GTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACT 222012 ||||| | | || | || | || ||||| | |||||| | ||| Sbjct 3252 CTCAAATTCAGCTCCCCATTTGTCTTGAAGACCTGGTGCCTCATTGGGACAAAACAGTGA 3311 Query 222013 CCAGTG-CTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAA 222071 ||||| | | || || || |||| |||||| || || || | |||||| || || | Sbjct 3312 CCAGTCTCCTCCTGCCTCC-ACTCTCTCCATGAACAGATCGGGTACCCACAGAGCATGGA 3370 Query 222072 AGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAA 222131 |||||||||||| |||||||| ||| ||||| ||| || |||| ||||||||||||| Sbjct 3371 AGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGTTCTTTTTCAGCTCCAAAAACTCAA 3430 Query 222132 AAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCAC 222191 | ||||| |||||||| ||||||||||||| || | || || | |||| |||| Sbjct 3431 AGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCGAATGCTCCCTTCCTCTTGCCACCAC 3490 Query 222192 CCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTG 222250 | ||||| | | | | | | | | ||| | | || || | || | || |||||| Sbjct 3491 CTTGATCTA-CGTAGCGTGCTGTGTCATTGTACACTCGCAGCATTGGAATGAGACCGTTG 3549 Query 222251 GATCGACCGTTGGTGCCCTTAATGTACG 222278 || |||||||||||| | ||||||| Sbjct 3550 GACGTGCCGTTGGTGCCCCTGATGTACG 3577 >seq104633 Length=6721 Score = 161 bits (178), Expect = 2e-34 Identities = 554/860 (64%), Gaps = 36/860 (4%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||| |||||| | ||| |||||| ||||||||| | || ||| Sbjct 1856 ATTTGGGAGATGTACAAAAAGGCTGAGGCCTCCTTCTGGACAGCCGAAGAGGTCGACCTG 1915 Query 25537 GC---CAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || | | ||| || ||| | |||| | || ||| ||| || | ||| Sbjct 1916 GCTTCCGATCACA---ACCATTGGAGCTCTCTTACTTCTGATGAGAGGCACTTCATTAAG 1972 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 | |||||||| |||||||| ||||||||||| || |||| ||||| || | | | Sbjct 1973 TCTGTGTTGGCCTTCTTTGCTGCCTCTGATGGCATTGTGACTGAGAACTTGGCTGGGCGC 2032 Query 25654 TTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | || | ||| | | | ||||| || |||||||| || ||||| ||||| Sbjct 2033 TTCATGACAGAGATTCAGATTCCT-GAGGCTCGCTGCTTCTACGGCTTTCAGATTGCCAT 2091 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGT 25769 || || | ||||| || ||||| || || |||| || ||| | | ||| Sbjct 2092 TGAGAACATTCACTCGGAAATGTATTCC---CTCTTGATCGACACCTACGTGAAGGACCA 2148 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 || ||||| |||| || || ||||||||| | || |||||| ||| || Sbjct 2149 CGTCGAGAAGGATCATCTCTTCAATGCCATCGATACTGTGCCTTCTGTCAAGAAGAAAGC 2208 Query 25830 GCGGTGGGCCATGAAGTGGA-TCAACAGCCAGAGCGCT---ACGTTTGGCGAGCGGCTGG 25885 ||||| | || |||| | || || | || || || || ||| | ||| Sbjct 2209 TGATTGGGCTCTCAAATGGATTGAAAAGAGTG-GCACTGACACTTTCCCTGAGAGATTGG 2267 Query 25886 TAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGG----TTCGTTTGCGGCCATCTTC 25941 | || || || || ||||| |||||||| ||| || ||| || ||||||| Sbjct 2268 TTGCATTCGCCGCCGTGGAAGGCATCTTCTTCTCTGGAAGCTTCTGTT----CCATCTTT 2323 Query 25942 TGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 ||||||||| ||| ||| |||||| || || | ||| ||| ||| | |||||||| Sbjct 2324 TGGCTCAAGAAGAGGGGCCTCATGCCTGGCCTCTGCTTCAGCAATGAGTTGATCAGCAGA 2383 Query 26002 GACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAA 26061 || ||||| || || | || |||||||| || || |||| | ||||| ||| Sbjct 2384 GATGAGGGCCTTCATTGCGACTTTGCCTGTCTCCTGTACA------GCATGCTCGTCAAC 2437 Query 26062 CCTTC-TCAAGAGAC-CGTCTACA-GTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAG 26118 | | || | ||| | | ||| |||||||| |||||||||||||| || ||||| Sbjct 2438 CGGCCTTCCACCGACATGCCCACACAAATCATCAAGGAGGCTGTGGAGATTGAAAAGGAA 2497 Query 26119 TTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAA 26178 ||| | || |||||| | |||||| | ||| Sbjct 2498 TTTGTCTCTGAGTCGCTTCCTGTTGGCCTCATTGGAATGAACGCCGCGCTCATGTGTCAA 2557 Query 26179 TACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGT 26238 |||||||| | |||||| ||| || || | || ||| | ||| |||||| Sbjct 2558 TACATTGAATTTGTGGCAGACAGACTTCTCGTCGCTCTTGGATGCTCCAAGGTCTACAAC 2617 Query 26239 ACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTT 26298 ||| | ||||| ||| | ||||||| || ||| || | || |||||||| |||||| Sbjct 2618 ACGGCCAACCCCTTCCCTTGGATGGAAATGATTTCGCTGCAGGGCAAGACCAATTTCTTT 2677 Query 26299 GAAAAGAGGGTCGGCGACTA 26318 || | || ||| ||||| || Sbjct 2678 GAGAGGAAGGTGGGCGAGTA 2697 >seq99766 Length=6639 Score = 161 bits (178), Expect = 2e-34 Identities = 554/860 (64%), Gaps = 36/860 (4%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||| |||||| | ||| |||||| ||||||||| | || ||| Sbjct 911 ATTTGGGAGATGTACAAAAAGGCTGAGGCCTCCTTCTGGACAGCCGAAGAGGTCGACCTG 970 Query 25537 GC---CAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || | | ||| || ||| | |||| | || ||| ||| || | ||| Sbjct 971 GCTTCCGATCACA---ACCATTGGAGCTCTCTTACTTCTGATGAGAGGCACTTCATTAAG 1027 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 | |||||||| |||||||| ||||||||||| || |||| ||||| || | | | Sbjct 1028 TCTGTGTTGGCCTTCTTTGCTGCCTCTGATGGCATTGTGACTGAGAACTTGGCTGGGCGC 1087 Query 25654 TTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | || | ||| | | | ||||| || |||||||| || ||||| ||||| Sbjct 1088 TTCATGACAGAGATTCAGATTCCT-GAGGCTCGCTGCTTCTACGGCTTTCAGATTGCCAT 1146 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGT 25769 || || | ||||| || ||||| || || |||| || ||| | | ||| Sbjct 1147 TGAGAACATTCACTCGGAAATGTATTCC---CTCTTGATCGACACCTACGTGAAGGACCA 1203 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 || ||||| |||| || || ||||||||| | || |||||| ||| || Sbjct 1204 CGTCGAGAAGGATCATCTCTTCAATGCCATCGATACTGTGCCTTCTGTCAAGAAGAAAGC 1263 Query 25830 GCGGTGGGCCATGAAGTGGA-TCAACAGCCAGAGCGCT---ACGTTTGGCGAGCGGCTGG 25885 ||||| | || |||| | || || | || || || || ||| | ||| Sbjct 1264 TGATTGGGCTCTCAAATGGATTGAAAAGAGTG-GCACTGACACTTTCCCTGAGAGATTGG 1322 Query 25886 TAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGG----TTCGTTTGCGGCCATCTTC 25941 | || || || || ||||| |||||||| ||| || ||| || ||||||| Sbjct 1323 TTGCATTCGCCGCCGTGGAAGGCATCTTCTTCTCTGGAAGCTTCTGTT----CCATCTTT 1378 Query 25942 TGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 ||||||||| ||| ||| |||||| || || | ||| ||| ||| | |||||||| Sbjct 1379 TGGCTCAAGAAGAGGGGCCTCATGCCTGGCCTCTGCTTCAGCAATGAGTTGATCAGCAGA 1438 Query 26002 GACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAA 26061 || ||||| || || | || |||||||| || || |||| | ||||| ||| Sbjct 1439 GATGAGGGCCTTCATTGCGACTTTGCCTGTCTCCTGTACA------GCATGCTCGTCAAC 1492 Query 26062 CCTTC-TCAAGAGAC-CGTCTACA-GTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAG 26118 | | || | ||| | | ||| |||||||| |||||||||||||| || ||||| Sbjct 1493 CGGCCTTCCACCGACATGCCCACACAAATCATCAAGGAGGCTGTGGAGATTGAAAAGGAA 1552 Query 26119 TTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAA 26178 ||| | || |||||| | |||||| | ||| Sbjct 1553 TTTGTCTCTGAGTCGCTTCCTGTTGGCCTCATTGGAATGAACGCCGCGCTCATGTGTCAA 1612 Query 26179 TACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGT 26238 |||||||| | |||||| ||| || || | || ||| | ||| |||||| Sbjct 1613 TACATTGAATTTGTGGCAGACAGACTTCTCGTCGCTCTTGGATGCTCCAAGGTCTACAAC 1672 Query 26239 ACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTT 26298 ||| | ||||| ||| | ||||||| || ||| || | || |||||||| |||||| Sbjct 1673 ACGGCCAACCCCTTCCCTTGGATGGAAATGATTTCGCTGCAGGGCAAGACCAATTTCTTT 1732 Query 26299 GAAAAGAGGGTCGGCGACTA 26318 || | || ||| ||||| || Sbjct 1733 GAGAGGAAGGTGGGCGAGTA 1752 >seq99765 Length=6612 Score = 161 bits (178), Expect = 2e-34 Identities = 554/860 (64%), Gaps = 36/860 (4%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||| |||||| | ||| |||||| ||||||||| | || ||| Sbjct 911 ATTTGGGAGATGTACAAAAAGGCTGAGGCCTCCTTCTGGACAGCCGAAGAGGTCGACCTG 970 Query 25537 GC---CAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || | | ||| || ||| | |||| | || ||| ||| || | ||| Sbjct 971 GCTTCCGATCACA---ACCATTGGAGCTCTCTTACTTCTGATGAGAGGCACTTCATTAAG 1027 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 | |||||||| |||||||| ||||||||||| || |||| ||||| || | | | Sbjct 1028 TCTGTGTTGGCCTTCTTTGCTGCCTCTGATGGCATTGTGACTGAGAACTTGGCTGGGCGC 1087 Query 25654 TTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | || | ||| | | | ||||| || |||||||| || ||||| ||||| Sbjct 1088 TTCATGACAGAGATTCAGATTCCT-GAGGCTCGCTGCTTCTACGGCTTTCAGATTGCCAT 1146 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGT 25769 || || | ||||| || ||||| || || |||| || ||| | | ||| Sbjct 1147 TGAGAACATTCACTCGGAAATGTATTCC---CTCTTGATCGACACCTACGTGAAGGACCA 1203 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 || ||||| |||| || || ||||||||| | || |||||| ||| || Sbjct 1204 CGTCGAGAAGGATCATCTCTTCAATGCCATCGATACTGTGCCTTCTGTCAAGAAGAAAGC 1263 Query 25830 GCGGTGGGCCATGAAGTGGA-TCAACAGCCAGAGCGCT---ACGTTTGGCGAGCGGCTGG 25885 ||||| | || |||| | || || | || || || || ||| | ||| Sbjct 1264 TGATTGGGCTCTCAAATGGATTGAAAAGAGTG-GCACTGACACTTTCCCTGAGAGATTGG 1322 Query 25886 TAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGG----TTCGTTTGCGGCCATCTTC 25941 | || || || || ||||| |||||||| ||| || ||| || ||||||| Sbjct 1323 TTGCATTCGCCGCCGTGGAAGGCATCTTCTTCTCTGGAAGCTTCTGTT----CCATCTTT 1378 Query 25942 TGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 ||||||||| ||| ||| |||||| || || | ||| ||| ||| | |||||||| Sbjct 1379 TGGCTCAAGAAGAGGGGCCTCATGCCTGGCCTCTGCTTCAGCAATGAGTTGATCAGCAGA 1438 Query 26002 GACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAA 26061 || ||||| || || | || |||||||| || || |||| | ||||| ||| Sbjct 1439 GATGAGGGCCTTCATTGCGACTTTGCCTGTCTCCTGTACA------GCATGCTCGTCAAC 1492 Query 26062 CCTTC-TCAAGAGAC-CGTCTACA-GTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAG 26118 | | || | ||| | | ||| |||||||| |||||||||||||| || ||||| Sbjct 1493 CGGCCTTCCACCGACATGCCCACACAAATCATCAAGGAGGCTGTGGAGATTGAAAAGGAA 1552 Query 26119 TTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAA 26178 ||| | || |||||| | |||||| | ||| Sbjct 1553 TTTGTCTCTGAGTCGCTTCCTGTTGGCCTCATTGGAATGAACGCCGCGCTCATGTGTCAA 1612 Query 26179 TACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGT 26238 |||||||| | |||||| ||| || || | || ||| | ||| |||||| Sbjct 1613 TACATTGAATTTGTGGCAGACAGACTTCTCGTCGCTCTTGGATGCTCCAAGGTCTACAAC 1672 Query 26239 ACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTT 26298 ||| | ||||| ||| | ||||||| || ||| || | || |||||||| |||||| Sbjct 1673 ACGGCCAACCCCTTCCCTTGGATGGAAATGATTTCGCTGCAGGGCAAGACCAATTTCTTT 1732 Query 26299 GAAAAGAGGGTCGGCGACTA 26318 || | || ||| ||||| || Sbjct 1733 GAGAGGAAGGTGGGCGAGTA 1752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927594180140160