Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq105396 109 7e-19 seq104633 87.8 2e-12 seq99766 87.8 2e-12 seq99765 87.8 2e-12 >seq105396 Length=45554 Score = 109 bits (120), Expect = 7e-19 Identities = 369/568 (65%), Gaps = 9/568 (2%) Strand=Plus/Minus Query 75524 GGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGG 75583 ||| | ||||||||||| || || | || | |||||| ||||| ||| |||||| | || Sbjct 3545 GGTCTCATTCCAATGCTGCGAGTGTACAATGACACAGCACGCTACGTAGATCAAG-GTGG 3487 Query 75584 CGTC----GCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGA 75639 | | | ||||| | |||| |||| |||| || ||||| || || ||| | || Sbjct 3486 TGGCAAGAGGAAGGGAGCATTCGCAATCTATCTGGAGCCTTGGCACGCGGACATCTTTGA 3427 Query 75640 GTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTC 75699 ||| | ||| | | ||||| || | |||||| || ||||||||||| | Sbjct 3426 GTTTTTGGAGCTGAAAAAGAACCACGGCAAGGAAGAGCAGCGAGCCAGAGATCTCTTC-C 3368 Query 75700 ATCC-CTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTC 75758 || | |||||| | || || || |||||| || | || |||| || || | ||||| | Sbjct 3367 ATGCTCTGTGGGTACCCGATCTGTTCATGGAGAGAGTGGAGGCAGGAGGAGACTGGTCAC 3308 Query 75759 TTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCC 75818 | || ||||| | ||||||||||||| ||| ||| | || ||||| | | Sbjct 3307 TGTTTTGTCCCAATGAGGCACCAGGTCTTCAAGACAAATGGGGAGCTGAATTTGAGGAGC 3248 Query 75819 TCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCG-ACTGTACCAGCCGCCGATGTT 75877 | |||||| ||||| ||||| | | ||| || |||| || || || Sbjct 3247 TGTACACACGCTATGAGCGCGAGGGCCGTG-CAAGACGTGCTGTTAAGGCTCAAGAGCTT 3189 Query 75878 TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGAT 75937 ||| || || | || | || | ||||| || || || |||||||| ||||||||| Sbjct 3188 TGGTTTGCCATCTTGGAAGCCCAAATAGAGACCGGTACCCCTTATATGCTCTACAAGGAT 3129 Query 75938 GCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGC 75997 || ||| ||| ||||| || | | || || || | | || || |||||| Sbjct 3128 CACTGCAACGCGAAATCCAACCACCAGCACCTCGGCACCATTCAATGTTCCAACCTTTGC 3069 Query 75998 ACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATC 76057 || |||||| | ||| |||| | || ||| || || ||| | || ||||| Sbjct 3068 ACTGAAATTGTCCAGTTCACATCACCCAAAGAAGTGGCCGTATGTAATCTCGCTTCAATG 3009 Query 76058 GCCCTTCCAAAGTATGTCAATGAAGAGA 76085 || || || || ||||| | |||||| Sbjct 3008 GCTCTGCCTAAATATGTGGACAAAGAGA 2981 >seq104633 Length=6721 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/238 (68%), Gaps = 5/238 (2%) Strand=Plus/Plus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | ||||| || | | | ||||||| || | ||||| | |||||| |||| Sbjct 2174 GCCATCGATACTGTGCCTTCTGTCAAGAAGAAAGCTGATTGGGCTCTCAAATGGATTGAA 2233 Query 65056 ACAAAGTCTCGCT----CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTAT 65111 | | ||| | || | ||| | ||| | | |||| || || ||||| || || Sbjct 2234 A-AGAGTGGCACTGACACTTTCCCTGAGAGATTGGTTGCATTCGCCGCCGTGGAAGGCAT 2292 Query 65112 CTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGG 65171 ||||||||| || ||||| | || | |||| | |||||| |||| |||||||| || Sbjct 2293 CTTCTTCTCTGGAAGCTTCTGTTCCATCTTTTGGCTCAAGAAGAGGGGCCTCATGCCTGG 2352 Query 65172 CCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 ||| |||||| ||||| | || | |||||||||| || || || |||||| Sbjct 2353 CCTCTGCTTCAGCAATGAGTTGATCAGCAGAGATGAGGGCCTTCATTGCGACTTTGCC 2410 >seq99766 Length=6639 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/238 (68%), Gaps = 5/238 (2%) Strand=Plus/Plus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | ||||| || | | | ||||||| || | ||||| | |||||| |||| Sbjct 1229 GCCATCGATACTGTGCCTTCTGTCAAGAAGAAAGCTGATTGGGCTCTCAAATGGATTGAA 1288 Query 65056 ACAAAGTCTCGCT----CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTAT 65111 | | ||| | || | ||| | ||| | | |||| || || ||||| || || Sbjct 1289 A-AGAGTGGCACTGACACTTTCCCTGAGAGATTGGTTGCATTCGCCGCCGTGGAAGGCAT 1347 Query 65112 CTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGG 65171 ||||||||| || ||||| | || | |||| | |||||| |||| |||||||| || Sbjct 1348 CTTCTTCTCTGGAAGCTTCTGTTCCATCTTTTGGCTCAAGAAGAGGGGCCTCATGCCTGG 1407 Query 65172 CCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 ||| |||||| ||||| | || | |||||||||| || || || |||||| Sbjct 1408 CCTCTGCTTCAGCAATGAGTTGATCAGCAGAGATGAGGGCCTTCATTGCGACTTTGCC 1465 >seq99765 Length=6612 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/238 (68%), Gaps = 5/238 (2%) Strand=Plus/Plus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | ||||| || | | | ||||||| || | ||||| | |||||| |||| Sbjct 1229 GCCATCGATACTGTGCCTTCTGTCAAGAAGAAAGCTGATTGGGCTCTCAAATGGATTGAA 1288 Query 65056 ACAAAGTCTCGCT----CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTAT 65111 | | ||| | || | ||| | ||| | | |||| || || ||||| || || Sbjct 1289 A-AGAGTGGCACTGACACTTTCCCTGAGAGATTGGTTGCATTCGCCGCCGTGGAAGGCAT 1347 Query 65112 CTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGG 65171 ||||||||| || ||||| | || | |||| | |||||| |||| |||||||| || Sbjct 1348 CTTCTTCTCTGGAAGCTTCTGTTCCATCTTTTGGCTCAAGAAGAGGGGCCTCATGCCTGG 1407 Query 65172 CCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 ||| |||||| ||||| | || | |||||||||| || || || |||||| Sbjct 1408 CCTCTGCTTCAGCAATGAGTTGATCAGCAGAGATGAGGGCCTTCATTGCGACTTTGCC 1465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595766363776320