Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq99508 109 1e-18 seq99507 109 1e-18 seq99506 109 1e-18 seq105140 95.1 2e-14 seq107032 84.2 4e-11 seq106987 84.2 4e-11 seq101412 84.2 4e-11 >seq99508 Length=2583 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| |||| ||||| ||||| || | || | |||||| || || |||||| Sbjct 2330 ATACCACCCCTCAGACGAAGCACCAGGTGAAGGGTGGACTCTTTTTGGATGTTGTAGTCG 2271 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | ||| |||| || || || ||||| || | | ||| ||||||||| Sbjct 2270 GCCAAGGTACGGCCATCTTCTAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGATCAGGA 2211 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || || |||| || ||||| ||| || ||||| Sbjct 2210 GGAATGCCTTCCTTGTCTTGAATCTTCTGCTTTACGTTCTCAATAGAATCAGAGGACTCC 2151 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || ||||| || || || || || || || || || ||||| Sbjct 2150 ACTTCAAGGGTAATAGTCTTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 2101 >seq99507 Length=2862 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| |||| ||||| ||||| || | || | |||||| || || |||||| Sbjct 2330 ATACCACCCCTCAGACGAAGCACCAGGTGAAGGGTGGACTCTTTTTGGATGTTGTAGTCG 2271 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | ||| |||| || || || ||||| || | | ||| ||||||||| Sbjct 2270 GCCAAGGTACGGCCATCTTCTAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGATCAGGA 2211 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || || |||| || ||||| ||| || ||||| Sbjct 2210 GGAATGCCTTCCTTGTCTTGAATCTTCTGCTTTACGTTCTCAATAGAATCAGAGGACTCC 2151 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || ||||| || || || || || || || || || ||||| Sbjct 2150 ACTTCAAGGGTAATAGTCTTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 2101 >seq99506 Length=3388 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| |||| ||||| ||||| || | || | |||||| || || |||||| Sbjct 106 ATACCACCCCTCAGACGAAGCACCAGGTGAAGGGTGGACTCTTTTTGGATGTTGTAGTCG 165 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | ||| |||| || || || ||||| || | | ||| ||||||||| Sbjct 166 GCCAAGGTACGGCCATCTTCTAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGATCAGGA 225 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || || |||| || ||||| ||| || ||||| Sbjct 226 GGAATGCCTTCCTTGTCTTGAATCTTCTGCTTTACGTTCTCAATAGAATCAGAGGACTCC 285 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || ||||| || || || || || || || || || ||||| Sbjct 286 ACTTCAAGGGTAATAGTCTTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 335 >seq105140 Length=834 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| || | ||||| |||| || | |||| ||| || || || |||||| Sbjct 459 ATACCACCCCTAAGGCGAAGCACCAAGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCG 400 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | ||| | || || | ||||| || ||||| || | | ||| ||||||||| Sbjct 399 GCGAGCGTGCGGCCGTCCTCAAGCTGTTTACCTGCAAAGATGAGACGCTGCTGATCAGGA 340 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || ||||| || || ||| | ||| || | || |||||||| Sbjct 339 GGGATGCCCTCCTTGTCTTGAATCTTCTGTTTCACATTCTCGATGCTGTCAGAAGACTCC 280 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | ||| || || || || || || ||||||||||| || ||||| Sbjct 279 ACTTCCAAAGTGATGGTCTTGCCAGTCAGAGTTTTTACAAAGATCTGCAT 230 >seq107032 Length=4648 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || || ||||| || || | ||| |||||||| || || ||||| || || || || Sbjct 4073 TGCTTGCCTGCAAAGATCAAACGCTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATC 4132 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || |||| ||| ||| | ||| || ||||||||||| ||||| || || || || Sbjct 4133 TTCTGCTTTACATTCTCAATGGAATCAGAGGACTCAACTTCCAGAGTAATGGTCTTGCCA 4192 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| || ||||| Sbjct 4193 GTAAGAGTCTTCACAAAGATCTGCAT 4218 >seq106987 Length=13006 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || || ||||| || || | ||| |||||||| || || ||||| || || || || Sbjct 591 TGCTTGCCTGCAAAGATCAAACGCTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATC 650 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || |||| ||| ||| | ||| || ||||||||||| ||||| || || || || Sbjct 651 TTCTGCTTTACATTCTCAATGGAATCAGAGGACTCAACTTCCAGAGTAATGGTCTTGCCA 710 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| || ||||| Sbjct 711 GTAAGAGTCTTCACAAAGATCTGCAT 736 >seq101412 Length=2033 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || || ||||| || || | ||| |||||||| || || ||||| || || || || Sbjct 576 TGCTTGCCTGCAAAGATCAAACGCTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATC 517 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || |||| ||| ||| | ||| || ||||||||||| ||||| || || || || Sbjct 516 TTCTGCTTTACATTCTCAATGGAATCAGAGGACTCAACTTCCAGAGTAATGGTCTTGCCA 457 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| || ||||| Sbjct 456 GTAAGAGTCTTCACAAAGATCTGCAT 431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898443082824480