Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq107536 113 9e-20 seq95317 113 9e-20 seq95316 113 9e-20 seq107032 105 1e-17 seq106987 105 1e-17 seq106909 105 1e-17 seq101412 105 1e-17 seq107649 96.9 7e-15 seq105140 93.3 8e-14 seq105589 91.5 3e-13 seq100005 91.5 3e-13 >seq107536 Length=9870 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| || || | || || || | ||| | ||| || ||| || || || Sbjct 4 ATGCCTCCTCTCAGGCGCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCC 63 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || | || |||| || || ||||| ||||| || | || ||||||||| Sbjct 64 GCCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGCTGATCAGGT 123 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| || || | || || || |||||||| || || ||| Sbjct 124 GGAATACCCTCTTTGTCTTGAATCTTCTGCTTGACGTTCTCAATAGAATCAGAGGACTCT 183 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||||||||| ||||| ||||| || | ||| |||||||| Sbjct 184 ACCTCAAGGGTAATGGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 233 >seq95317 Length=578 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| || || | || || || | ||| | ||| || ||| || || || Sbjct 4 ATGCCTCCTCTCAGGCGCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCC 63 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || | || |||| || || ||||| ||||| || | || ||||||||| Sbjct 64 GCCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGCTGATCAGGT 123 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| || || | || || || |||||||| || || ||| Sbjct 124 GGAATACCCTCTTTGTCTTGAATCTTCTGCTTGACGTTCTCAATAGAATCAGAGGACTCT 183 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||||||||| ||||| ||||| || | ||| |||||||| Sbjct 184 ACCTCAAGGGTAATGGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 233 >seq95316 Length=972 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| || || | || || || | ||| | ||| || ||| || || || Sbjct 380 ATGCCTCCTCTCAGGCGCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCC 321 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || | || |||| || || ||||| ||||| || | || ||||||||| Sbjct 320 GCCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGCTGATCAGGT 261 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| || || | || || || |||||||| || || ||| Sbjct 260 GGAATACCCTCTTTGTCTTGAATCTTCTGCTTGACGTTCTCAATAGAATCAGAGGACTCT 201 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||||||||| ||||| ||||| || | ||| |||||||| Sbjct 200 ACCTCAAGGGTAATGGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 151 >seq107032 Length=4648 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || |||| || || || |||| || | || || || |||||||| || | Sbjct 4036 GATGTTGTAGTCAGCCAAAGTGCGGCCATCCTCAAGCTGCTTGCCTGCAAAGATCAAACG 4095 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| |||||||| || || ||||| || || || || || | |||||||| || || Sbjct 4096 CTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTTACATTCTCAATGGA 4155 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || || || ||||| ||||||||||| || ||||| | || || | ||| ||||| Sbjct 4156 ATCAGAGGACTCAACTTCCAGAGTAATGGTCTTGCCAGTAAGAGTCTTCACAAAGATCTG 4215 Query 192534 CAT 192536 ||| Sbjct 4216 CAT 4218 >seq106987 Length=13006 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || |||| || || || |||| || | || || || |||||||| || | Sbjct 554 GATGTTGTAGTCAGCCAAAGTGCGGCCATCCTCAAGCTGCTTGCCTGCAAAGATCAAACG 613 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| |||||||| || || ||||| || || || || || | |||||||| || || Sbjct 614 CTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTTACATTCTCAATGGA 673 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || || || ||||| ||||||||||| || ||||| | || || | ||| ||||| Sbjct 674 ATCAGAGGACTCAACTTCCAGAGTAATGGTCTTGCCAGTAAGAGTCTTCACAAAGATCTG 733 Query 192534 CAT 192536 ||| Sbjct 734 CAT 736 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || ||||| || | || || || | ||||| ||| || ||| || || || Sbjct 1191 ATACCTCCCCTAAGGCGAAGCACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCG 1250 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || | || || | || |||||||||||||| | | ||| || ||||| Sbjct 1251 GCGAGGGTACGACCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGG 1310 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || ||||| || | |||||||| || || || ||||| Sbjct 1311 GGAATGCCTTCCTTGTCCTGTATCTTCTGCTTTACATTCTCGATGCTGTCAGAGGATTCG 1370 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||||||||| || || | || || | || |||||||| Sbjct 1371 ACCTCAAGGGTAATGGTTTTTCCGGTGAGGGTCTTCACGAAAATCTGCAT 1420 >seq106909 Length=2620 Score = 105 bits (116), Expect = 1e-17 Identities = 165/234 (71%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || || || | || ||||| | ||||| ||| || |||||| || || Sbjct 2349 ATGCCACCCCTTAGGCGAAGCACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCG 2408 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || | || ||||| || || || |||||||| | | ||| ||||||||| Sbjct 2409 GCCAAGGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAGATCAGGCGCTGCTGATCAGGT 2468 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGAC-GA--- 192482 || || || || |||||||| || || | || || ||| | || ||| | || Sbjct 2469 GGGATGCCCTCCTTATCTTGAATCTTTTGCTTGAC----GTTCTCGATGCTGTCAGAGCT 2524 Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| ||||| | ||| ||||| || ||||| || ||||| | ||| |||||||| Sbjct 2525 TTCCACTTCCAAAGTGATGGTCTTGCCAGTCAAAGTTTTTACAAAGATCTGCAT 2578 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 192382 TCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTA 192441 || |||| || || ||||| ||||| || | || ||||||||||| || || ||||| Sbjct 2196 TCCTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGCTGATCAGGTGGGATACCCTCTTTG 2255 Query 192442 TCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATG 192501 || || || || | || || || |||||||| || || || || || || |||||| Sbjct 2256 TCCTGGATCTTCTGCTTGACGTTCTCAATAGAATCAGAGGACTCGACCTCCAGGGTAATG 2315 Query 192502 GTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| ||||| || | || || ||||| Sbjct 2316 GTTTTGCCAGTCAATGTCTTGACGAAGATTTGCAT 2350 >seq101412 Length=2033 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || |||| || || || |||| || | || || || |||||||| || | Sbjct 613 GATGTTGTAGTCAGCCAAAGTGCGGCCATCCTCAAGCTGCTTGCCTGCAAAGATCAAACG 554 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| |||||||| || || ||||| || || || || || | |||||||| || || Sbjct 553 CTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTTACATTCTCAATGGA 494 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || || || ||||| ||||||||||| || ||||| | || || | ||| ||||| Sbjct 493 ATCAGAGGACTCAACTTCCAGAGTAATGGTCTTGCCAGTAAGAGTCTTCACAAAGATCTG 434 Query 192534 CAT 192536 ||| Sbjct 433 CAT 431 >seq107649 Length=18249 Score = 96.9 bits (106), Expect = 7e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||||||| |||| || | || | |||| || || ||| || || || Sbjct 5601 ATGCCACCTCTAAGGCGTAGAACGAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCG 5542 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || | || || | || || ||||| ||||| || | ||| ||||| || Sbjct 5541 GCCAAAGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCGGGA 5482 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || || | || || || ||||| || || ||||| Sbjct 5481 GGAATGCCCTCCTTGTCTTGAATCTTCTGCTTGACGTTCTCGATAGAGTCAGAGGATTCG 5422 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| |||||||| || |||||||| | || || | || ||||||||| Sbjct 5421 ACTTCCAGAGTAATTGTCTTACCAGTGAGGGTCTTGACGAAAATCTGCATT 5371 >seq105140 Length=834 Score = 93.3 bits (102), Expect = 8e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 || || || | ||||| |||||| ||| || || || | || || || |||| || Sbjct 210 ACCAAGTGGAGAGTAGACTCTTTTTGGATGTTGTAGTCGGCCAAGGTACGACCATCCTCG 151 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 | || |||||||||||||| | | ||| |||||||| || || || ||||| || || Sbjct 150 AGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCAGGAGGGATGCCCTCTTTGTCCTGG 91 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 || || | || || || ||||| || || || || || || | || ||||| || Sbjct 90 ATCTTCTGCTTCACGTTCTCAATAGAGTCAGAGGACTCCACCTCCAAGGTGATGGTCTTG 31 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| || | ||| || ||||| Sbjct 30 CCAGTCAATGTCTTCACAAAGATTTGCAT 2 >seq105589 Length=6046 Score = 91.5 bits (100), Expect = 3e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 192391 TGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATT 192450 || || || ||||| || | | ||| ||||||||||| || ||||| |||||||| || Sbjct 5904 TGCTTGCCTGCAAAAATGAGACGCTGCTGATCAGGTGGGATGCCTTCCTTATCTTGGATC 5845 Query 192451 TTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 192510 || | || || || ||||| || || ||||| ||||| | ||| ||||| || ||| Sbjct 5844 TTCTGCTTCACGTTCTCGATAGAGTCAGAGGATTCGACTTCCAAAGTGATGGTCTTTCCA 5785 Query 192511 GTTAATGTTTTAATAAATATCTGCATTTTA 192540 || ||||| || | || || |||||| || Sbjct 5784 GTCAATGTCTTGACGAAGATTTGCATTGTA 5755 >seq100005 Length=3171 Score = 91.5 bits (100), Expect = 3e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 192391 TGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATT 192450 || || || ||||| || | | ||| ||||||||||| || ||||| |||||||| || Sbjct 2855 TGCTTGCCTGCAAAAATGAGACGCTGCTGATCAGGTGGGATGCCTTCCTTATCTTGGATC 2796 Query 192451 TTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 192510 || | || || || ||||| || || ||||| ||||| | ||| ||||| || ||| Sbjct 2795 TTCTGCTTCACGTTCTCGATAGAGTCAGAGGATTCGACTTCCAAAGTGATGGTCTTTCCA 2736 Query 192511 GTTAATGTTTTAATAAATATCTGCATTTTA 192540 || ||||| || | || || |||||| || Sbjct 2735 GTCAATGTCTTGACGAAGATTTGCATTGTA 2706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983121333303900