Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq93816 96.9 6e-15 seq107536 95.1 2e-14 seq107474 95.1 2e-14 seq106987 95.1 2e-14 seq95317 95.1 2e-14 seq95316 95.1 2e-14 seq107649 87.8 3e-12 seq106909 86.0 1e-11 >seq93816 Length=1867 Score = 96.9 bits (106), Expect = 6e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| ||||| || | ||| ||||| | ||||| ||| || |||||| || || Sbjct 233 ATGCCACCCCTAAGGCGAAGTACCAAATGGAGAGTAGACTCCTTTTGAATATTGTAGTCG 292 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || | || || | || || || || || || | | |||||||||||| Sbjct 293 GCCAAGGTACGACCATCCTCAAGCTGCTTGCCTGCGAAGATGAGGCGCTGTTGGTCAGGA 352 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || || || | ||| ||||| || | ||| || || || Sbjct 353 GGGATGCCCTCCTTGTCCTGGATCTTCTGTTTCACATTCTCAATGGAATCAGAGGACTCC 412 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| || ||||| ||||| || || | || || | ||| |||||||| || Sbjct 413 ACTTCGAGGGTAATAGTTTTGCCGGTCAGAGTCTTTACGAAGATCTGCATGTT 465 >seq107536 Length=9870 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| || || | || || || | ||| | ||| || || || || || Sbjct 4 ATGCCTCCTCTCAGGCGCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCC 63 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || |||| |||| || || ||||| || || || | || || |||||| Sbjct 64 GCCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGCTGATCAGGT 123 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| ||||| || || | || || || |||| ||| || || ||| Sbjct 124 GGAATACCCTCTTTGTCTTGAATCTTCTGCTTGACGTTCTCAATAGAATCAGAGGACTCT 183 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||||||||| ||||| ||||| || | || |||||||| Sbjct 184 ACCTCAAGGGTAATGGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 233 >seq107474 Length=3350 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| ||||| || | || ||||| | ||||| |||||| |||||| || || Sbjct 1758 ATGCCACCCCTAAGGCGAAGCACCAAATGGAGAGTAGACTCTTTTTGAATATTGTAGTCG 1699 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || |||| || | ||| |||||||| || || | | |||||||||||| Sbjct 1698 GCCAAGGTACGACCGTCCTCGAGTTGCTTACCAGCGAAGATGAGGCGCTGTTGGTCAGGG 1639 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| || || | || || || || | || || || Sbjct 1638 GGGATGCCCTCCTTGTCTTGGATCTTCTGCTTGACGTTCTCAATGCTGTCAGAGCTCTCC 1579 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || ||||| || || ||||| || || || | || |||||||| Sbjct 1578 ACTTCAAGGGTAATAGTCTTGCCAGTCAACGTCTTCACAAAGATCTGCAT 1529 >seq106987 Length=13006 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || ||||| || | || || || | ||||| ||| || || || || || Sbjct 1191 ATACCTCCCCTAAGGCGAAGCACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCG 1250 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || |||| || | || ||||||||||| || | | ||| |||||||| Sbjct 1251 GCGAGGGTACGACCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGG 1310 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || ||||| || | |||||||| || | || || ||||| Sbjct 1311 GGAATGCCTTCCTTGTCCTGTATCTTCTGCTTTACATTCTCGATGCTGTCAGAGGATTCG 1370 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||||||||| || || | || || | ||| |||||||| Sbjct 1371 ACCTCAAGGGTAATGGTTTTTCCGGTGAGGGTCTTCACGAAAATCTGCAT 1420 >seq95317 Length=578 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| || || | || || || | ||| | ||| || || || || || Sbjct 4 ATGCCTCCTCTCAGGCGCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCC 63 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || |||| |||| || || ||||| || || || | || || |||||| Sbjct 64 GCCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGCTGATCAGGT 123 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| ||||| || || | || || || |||| ||| || || ||| Sbjct 124 GGAATACCCTCTTTGTCTTGAATCTTCTGCTTGACGTTCTCAATAGAATCAGAGGACTCT 183 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||||||||| ||||| ||||| || | || |||||||| Sbjct 184 ACCTCAAGGGTAATGGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 233 >seq95316 Length=972 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| || || | || || || | ||| | ||| || || || || || Sbjct 380 ATGCCTCCTCTCAGGCGCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCC 321 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || |||| |||| || || ||||| || || || | || || |||||| Sbjct 320 GCCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGCTGATCAGGT 261 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| ||||| || || | || || || |||| ||| || || ||| Sbjct 260 GGAATACCCTCTTTGTCTTGAATCTTCTGCTTGACGTTCTCAATAGAATCAGAGGACTCT 201 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||||||||| ||||| ||||| || | || |||||||| Sbjct 200 ACCTCAAGGGTAATGGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 151 >seq107649 Length=18249 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||||||| |||| || | || | |||| || || || || || || Sbjct 5601 ATGCCACCTCTAAGGCGTAGAACGAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCG 5542 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| || |||| || | || || ||||| || || || | ||| || || || Sbjct 5541 GCCAAAGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCGGGA 5482 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| || || | || || || |||| || || ||||| Sbjct 5481 GGAATGCCCTCCTTGTCTTGAATCTTCTGCTTGACGTTCTCGATAGAGTCAGAGGATTCG 5422 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| |||||||| || |||||||| | || || | ||| ||||||||| Sbjct 5421 ACTTCCAGAGTAATTGTCTTACCAGTGAGGGTCTTGACGAAAATCTGCATT 5371 >seq106909 Length=2620 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| |||| || || ||||| || || || | || || |||||||| || || |||| Sbjct 2194 CGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGCTGATCAGGTGGGATACCCTCTT 2253 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | || || || || | || || || |||| ||| || || || || || || |||| Sbjct 2254 TGTCCTGGATCTTCTGCTTGACGTTCTCAATAGAATCAGAGGACTCGACCTCCAGGGTAA 2313 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| ||||| ||||| || | ||| || ||||| Sbjct 2314 TGGTTTTGCCAGTCAATGTCTTGACGAAGATTTGCAT 2350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903917302261200