Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq105396 131 5e-25 >seq105396 Length=45554 Score = 131 bits (144), Expect = 5e-25 Identities = 611/945 (65%), Gaps = 30/945 (3%) Strand=Plus/Plus Query 155583 AGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCT--ACAA 155640 ||| | || || || ||||||||||| || || ||| || | ||| || |||| Sbjct 3004 AGAGCCATTGAAGCGAGATTACATACGGCCACTTCTTTGG-GT-GATGTGAACTGGACAA 3061 Query 155641 TCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGT 155700 | ||| ||| ||||| |||| | |||||||| | | || ||||| ||||| || Sbjct 3062 TTTCAGTGCAAAGGTTGGAACATTGAATGGTGCCGAGGTGCTGGTGGTTGGATTTCGCGT 3121 Query 155701 TACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCT 155760 | || ||||||||| || || || ||||| || ||||| || || || |||| || Sbjct 3122 TGCAGTGATCCTTGTAGAGCATATAAGGGGTACCGGTCTCTATTTGGGCTTCCAAGATGG 3181 Query 155761 TTAGCCAGAGGTCACGGGCATTAATTTG-CTTGTTGTATCTGCCTTCCGACTCATATTTC 155819 | ||| || || | || |||| | | ||| | | ||| || |||||| Sbjct 3182 CAAACCAAAGCTCTTGAGCCTTAACAGCACGTCTTGCA-CGGCCCTCGCGCTCATAGCGT 3240 Query 155820 ATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTC----AGTCCAGGGCACTTATC 155875 | |||||| | | ||| ||| | | | || || || || || || || Sbjct 3241 GTGTACAGC-TCCTCAAAT--TCAGC-TCCCCATTTGTCTTGAAGACCTGGTGCCTCATT 3296 Query 155876 GGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTC--CATAAATACATCACTC 155933 ||| |||||||| ||||| | | | | | | ||| ||| ||| || | ||| Sbjct 3297 GGGACAAAACAGTGACCAG--TCTCCTCCTGCCTCCACTCTCTCCATGAACAGATCGGGT 3354 Query 155934 GCCCAAATAGCATAGAAAAGGTCCCTTGC-CTTTGACTCCTCATCGCCGTGATTCTTCCG 155992 |||| | ||||| ||| || || || || | || ||| || | |||||| ||||| Sbjct 3355 ACCCACAGAGCATGGAAGAGATCTCTGGCTCGCTG-CTCTTCCTTGCCGTGGTTCTTTTT 3413 Query 155993 TAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACC 156052 ||||| || || || || || | || ||||||||||| || || || || Sbjct 3414 CAGCTCCAAAAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCGAATGCTCC 3473 Query 156053 ATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCAT 156109 ||||||||| ||||| |||||||| || || || || | |||| | || | ||||| Sbjct 3474 CTTCCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCATTGTACACTCGCAGCAT 3533 Query 156110 AGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAAC 156169 ||||| | ||| ||||| ||||| ||||| || | || | ||| | | |||| Sbjct 3534 TGGAATGAGACCGTTGGACGTGCCGTTGGTGCCCCTGATGTACGAGTTGGCAGCACGAAT 3593 Query 156170 ATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTAC 156229 || || | | || ||||| || || | | |||||||| ||||| | || | Sbjct 3594 TTTGTGCACACTAAGACCAATTCCTCCGGCGCTCTTAGAAATCAAGGCGCACTGTTTAAG 3653 Query 156230 AGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAA 156289 || | | | || ||||| || || |||| ||| | || |||||||| | Sbjct 3654 CGTGTCGTATATCCCTTCTATGCTGTCTTCTTGCATGTTAACGAGGAAGCACGAAGAAAG 3713 Query 156290 TTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATT 156349 ||| |||||||| || ||||| ||||| ||||| || || |||||| | |||| || || Sbjct 3714 TTGTGGTCGTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGT-GAATAATTGTT 3772 Query 156350 -AGACATATAATCGTATGTCTCC-TTAATCTTCTCAAGATTAGACCCGTGAATACAGATA 156407 ||| ||| || || |||||| || ||| | | | || | ||| | | | | Sbjct 3773 GAGAGATAAGATTATACGTCTCCAATACAGCTCTGATG-TCAGTCTTGTGCAGTCCTACA 3831 Query 156408 GAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCC-ATCAATTCGCAGAAG 156466 | || | |||| |||| || || || | ||| ||||| || |||||| | || || Sbjct 3832 GCAACTCGCATCAACATGTGTTGGGGCCTCTCCACAATTGTGCCGTTCAATTTGAAG-AG 3890 Query 156467 GTATGCGCGTTCCAGAGTTTTAAACCCGAAATAA-TCAAACAGAA 156510 || | |||||||| || || || || |||||| | ||| |||| Sbjct 3891 ATAAGAGCGTTCCAATGTCTTGAAGCCAAAATAATTGAAAAAGAA 3935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1469786365687618