Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq105140 100 2e-16 seq107474 96.9 3e-15 seq100005 89.7 4e-13 seq107649 87.8 1e-12 seq107536 86.0 5e-12 seq95317 86.0 5e-12 seq95316 86.0 5e-12 seq93816 86.0 5e-12 seq106987 84.2 2e-11 seq105589 84.2 2e-11 >seq105140 Length=834 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| |||||| | || ||||| ||||| || | ||| |||| || Sbjct 230 ATGCAGATCTTTGTAAAAACTCTGACTGGCAAGACCATCACTTTGGAAGTGGAGTCTTCT 289 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || | ||| | || |||||||||||| ||||| || ||| | || ||||| Sbjct 290 GACAGCATCGAGAATGTGAAACAGAAGATTCAAGACAAGGAGGGCATCCCTCCTGATCAG 349 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| ||||||||||| ||||| | | | || | || || |||||| Sbjct 350 CAGCGTCTCATCTTTGCAGGTAAACAGCTTGAGGACGGCCGCACGCTCGCCGACTACAAC 409 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || ||||| || ||||| | ||| ||||| Sbjct 410 ATCCAAAAGGAGTCTACTCTTCACTTGGTG 439 >seq107474 Length=3350 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTG 110330 |||||| || ||||| || ||||| || ||||| ||||| ||| | || || | ||| Sbjct 1984 AATGCAGATCTTTGTGAAGACTTTGACTGGCAAGACCATCACCCTTGAGGTCGAATCCTC 2043 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 ||| | | | | ||||| || ||||| |||||||| ||| | ||| |||| Sbjct 2044 T-GATTCCATTGAGAACGTAAAGCAAAAGATCCAGGACAAAGAGGGCATCCCCCCTGATC 2102 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || | || || | || || || ||||| ||||||| | | || |||| ||||||| Sbjct 2103 AGCAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCTTGGCCGATTACA 2162 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||||||||| || ||||| | ||| ||||| Sbjct 2163 ACATTCAAAAGGAGTCTACTCTTCACTTGGTG 2194 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || || || || ||| | ||||||||||| |||||| ||||| |||| | Sbjct 1298 AACATGCAGATCTTCGTAAAGACTCTGACCGGCAAAACTATTACCCTCGAAGTGGAGTCC 1357 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| | ||| | || || |||||||| ||||| || ||| | ||| || Sbjct 1358 TCTGATTCCATCGAGAATGTGAAGCAGAAGATCCAAGACAAGGAGGGCATCCCCCCTGAC 1417 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | || || | || ||||| || || ||||||| | | || |||| || ||| Sbjct 1418 CAGCAGCGCCTCATCTTCGCTGGTAAGCAACTCGAGGATGGCCGCACCTTGGCTGACTAC 1477 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||| ||||| ||||| || | ||| |||| Sbjct 1478 AACATCCAAAAGGAATCCACCCTCCACTTGGT 1509 >seq100005 Length=3171 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || || || || || ||||| || |||||| | ||| |||| Sbjct 2938 ATGCAAATCTTCGTGAAGACATTGACTGGCAAGACTATTACCCTTGAAGTGGAGAGCTCT 2997 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||| || | | | || || |||||||| ||||| || ||| | || || || Sbjct 2998 GATTCTATTGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAG 3057 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | || || | ||| ||||||||||||||||| | | | || |||| || |||||| Sbjct 3058 CAACGTCTGATCTTTGCAGGTAAACAGCTGGAGGACGGCCGCACTTTGGCTGACTACAAC 3117 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || || || || | ||| ||||| | | ||| |||| || Sbjct 3118 ATCCAGAAGGAGTCCACTCTTCACTTGGTGCTTCGCCTGAGAGGCGG 3164 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 110268 TTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAG 110326 ||| ||||||||| || ||||| || || || || || ||||| || | ||| || | Sbjct 2705 TTACAATGCAAATCTTCGTCAAGACATTGACTGGAAAGACCATCACTTTGGAAGTCGAAT 2764 Query 110327 CCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTG 110386 ||| || || ||| | || || |||||||| || || |||||| | || Sbjct 2765 CCTCT-GACTCTATCGAGAACGTGAAGCAGAAGATCCAAGATAAGGAAGGCATCCCACCT 2823 Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446 ||||| || | || |||| ||| || || ||||| ||||| | | | || | || || Sbjct 2824 GATCAGCAGCGTCTCATTTTTGCAGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCTGAC 2883 Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||||||||||| ||||| || | ||| |||| Sbjct 2884 TACAACATTCAAAAGGAATCCACCCTCCACTTGGT 2918 >seq107649 Length=18249 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || || || ||||| ||||| ||| | || ||| || Sbjct 5600 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTCGAGTCTTCT 5659 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||| | | | | || || ||||||||| ||||| |||||| | ||| ||||| Sbjct 5660 GATAGTATTGAGAACGTCAAGCAGAAGATTCAGGACAAGGAAGGCATTCCCCCTGATCAG 5719 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | || ||||| ||||| ||||| | | || || || |||||||| Sbjct 5720 CAGCGTCTGATCTTCGCTGGTAAGCAGCTCGAGGACGGTCGTACTCTGCCG-ATTACAAC 5778 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || ||||| || ||||| | ||| ||||| Sbjct 5779 ATCCAAAAGGAGTCTACCCTTCACTTGGTG 5808 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || || || || |||||||| ||||| ||| ||||| ||| || Sbjct 6283 ATGCAGATCTTCGTTAAGACCTTGACCGGCAAGACCATCACCCTCGAAGTTGAGTCTTCT 6342 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||| | ||| | || ||||||||||| ||||| || ||| | || ||||| Sbjct 6343 GATAGTATCGAGAATGTGAAACAGAAGATCCAGGACAAGGAGGGCATTCCTCCCGATCAG 6402 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | | || | || || || ||||| ||||| | | || | || || |||||| Sbjct 6403 CAGCGTTTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGTACTCTTGCCGACTACAAC 6462 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || ||||| || ||||| | ||| ||||| Sbjct 6463 ATCCAAAAGGAGTCTACCCTCCACTTGGTG 6492 >seq107536 Length=9870 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || || || ||||||||||||||| | || ||| | Sbjct 233 ATGCAGATCTTTGTGAAGACATTGACTGGCAAAACCATTACCCTTGAGGTAGAGTCCTCT 174 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||| || | | | || || ||||||||| |||||||| || | || ||||| Sbjct 173 GATTCTATTGAGAACGTCAAGCAGAAGATTCAAGACAAAGAGGGTATTCCACCTGATCAG 114 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | || | || || || ||||||||||| | | | || ||||||| |||||| Sbjct 113 CAACGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGGCGGACTACAAC 54 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || || || || | ||| |||| | | ||| |||| || Sbjct 53 ATCCAGAAGGAGTCCACTCTTCACTTGGTCCTGCGCCTGAGAGGAGG 7 >seq95317 Length=578 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || || || ||||||||||||||| | || ||| | Sbjct 233 ATGCAGATCTTTGTGAAGACATTGACTGGCAAAACCATTACCCTTGAGGTAGAGTCCTCT 174 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||| || | | | || || ||||||||| |||||||| || | || ||||| Sbjct 173 GATTCTATTGAGAACGTCAAGCAGAAGATTCAAGACAAAGAGGGTATTCCACCTGATCAG 114 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | || | || || || ||||||||||| | | | || ||||||| |||||| Sbjct 113 CAACGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGGCGGACTACAAC 54 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || || || || | ||| |||| | | ||| |||| || Sbjct 53 ATCCAGAAGGAGTCCACTCTTCACTTGGTCCTGCGCCTGAGAGGAGG 7 >seq95316 Length=972 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || || || ||||||||||||||| | || ||| | Sbjct 151 ATGCAGATCTTTGTGAAGACATTGACTGGCAAAACCATTACCCTTGAGGTAGAGTCCTCT 210 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||| || | | | || || ||||||||| |||||||| || | || ||||| Sbjct 211 GATTCTATTGAGAACGTCAAGCAGAAGATTCAAGACAAAGAGGGTATTCCACCTGATCAG 270 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | || | || || || ||||||||||| | | | || ||||||| |||||| Sbjct 271 CAACGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGGCGGACTACAAC 330 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || || || || | ||| |||| | | ||| |||| || Sbjct 331 ATCCAGAAGGAGTCCACTCTTCACTTGGTCCTGCGCCTGAGAGGAGG 377 >seq93816 Length=1867 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || || || || ||| | ||||||||||| |||||| ||||| |||| | Sbjct 465 AACATGCAGATCTTCGTAAAGACTCTGACCGGCAAAACTATTACCCTCGAAGTGGAGTCC 406 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| | | | | || ||||||||||| ||||| || ||| | || || Sbjct 405 TCTGATTCCATTGAGAATGTGAAACAGAAGATCCAGGACAAGGAGGGCATCCCTCCTGAC 346 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| | || || | || || || ||||| ||||||| | || |||| || ||| Sbjct 345 CAACAGCGCCTCATCTTCGCAGGCAAGCAGCTTGAGGATGGTCGTACCTTGGCCGACTAC 286 Query 110450 AACATTCAAAAAGAATCTAC 110469 || |||||||| || ||||| Sbjct 285 AATATTCAAAAGGAGTCTAC 266 >seq106987 Length=13006 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 ||||| || ||||| || ||||| || ||||| ||||| ||| | || ||| || Sbjct 1648 ATGCAGATCTTTGTAAAGACTTTGACTGGCAAGACCATCACCCTTGAGGTTGAGAGCTCT 1589 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| | ||| | || || |||||||| ||||| || ||| | ||| ||| Sbjct 1588 GACTCCA---TCGAGAACGTCAAGCAGAAGATCCAAGACAAGGAGGGCATTCCCCCTGAT 1532 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | | |||| || || || ||||| ||||||| | | || |||| |||||| Sbjct 1531 CAGCAGCGTTTGATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGATTAC 1472 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||||||||| || || || | ||| ||||| Sbjct 1471 AACATTCAAAAGGAGTCCACTCTTCACTTGGTG 1439 >seq105589 Length=6046 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 110268 TTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAG 110326 ||| ||||||||| || ||||| || || || || || ||||| || | ||| || | Sbjct 5754 TTACAATGCAAATCTTCGTCAAGACATTGACTGGAAAGACCATCACTTTGGAAGTCGAAT 5813 Query 110327 CCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTG 110386 ||| || || ||| | || || |||||||| || || |||||| | || Sbjct 5814 CCTCT-GACTCTATCGAGAACGTGAAGCAGAAGATCCAAGATAAGGAAGGCATCCCACCT 5872 Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446 ||||| || | || |||| ||| || || ||||| ||||| | | | || | || || Sbjct 5873 GATCAGCAGCGTCTCATTTTTGCAGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCTGAC 5932 Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||||||||||| ||||| || | ||| |||| Sbjct 5933 TACAACATTCAAAAGGAATCCACCCTCCACTTGGT 5967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412299636255002