Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20divionensis_20[genbank_20GCA_5F000826405.1_202015-01- 07] 107,714 sequences; 84,769,362 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq94522 95.1 1e-14 seq106909 87.8 2e-12 seq99508 87.8 2e-12 seq99507 87.8 2e-12 seq99506 87.8 2e-12 seq105692 84.2 2e-11 >seq94522 Length=3036 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||||||||| || || || || | ||||| | ||||| || || Sbjct 1015 ATGCAAATCTTTGTAAAAACTTTGACTGGCAAGACCATCACCTTGGAAGTGGAGTCCTCT 1074 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || |||||||| | || || || || ||| || || || || || || || || ||| Sbjct 1075 GACTCTATCGAGAACGTTAAGCAGAAGATTCAGGACAAGGAAGGCATCCCCCCTGACCAG 1134 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | ||||| | | ||||| || || || || | | | | | | ||| ||||| Sbjct 1135 CAGCGCCTCATCTTTGCAGGCAAGCAGCTTGAGGACGGTCGCACTTTGGCCGACTACAAC 1194 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAAAT 25406 || ||||| || |||||| |||| || ||| | || ||| | |||||| ||| Sbjct 1195 ATCCAAAAGGAGTCCACCCTTCACTTGGTGCTCAGGTTGCGTGGAGGACAAT 1246 >seq106909 Length=2620 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || || ||||| || || ||| | || || | || ||||| || Sbjct 2351 CATGCAAATCTTCGTCAAGACATTGACTGGCAAAACCATTACCCTGGAGGTCGAGTCCTC 2292 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| |||| ||| | || || || || || || ||||||||||| || || ||||| Sbjct 2291 TGATTCTATTGAGAACGTCAAGCAGAAGATCCAGGACAAAGAGGGTATCCCACCTGATCA 2232 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||| | | || | || ||||| || || || || | | | | || ||| ||||| Sbjct 2231 GCAACGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTCGCCGACTACAA 2172 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || || ||||| |||| || ||| | | ||||| ||||| Sbjct 2171 CATCCAGAAGGAGTCCACTCTTCACTTGGTGCTTCGTTTGAGGGGAGG 2124 >seq99508 Length=2583 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/233 (69%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 25170 ACAACA-TGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAA 25228 |||||| ||||| | || || || ||| | || ||||| | || || | || |||||| Sbjct 1867 ACAACAATGCAAATCTTCGTGAAGACACTGACTGGAAAGACCATTACCCTTGAGGTCGAA 1926 Query 25229 GCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCC 25288 || || |||| ||| | || || ||||| || || || || || || || || Sbjct 1927 TCCTCTGACTCTATTGAGAACGTCAAGCAAAAGATACAGGACAAGGAAGGCATCCCCCCT 1986 Query 25289 GATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGAT 25348 |||||||| | ||||| | | ||||| || ||||| |||| | | | | | ||| Sbjct 1987 GATCAGCAGCGTCTCATCTTTGCAGGCAAGCAGCTCGAGGATGGTCGCACTTTGGCCGAC 2046 Query 25349 TACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||||||| || || ||| | || || || | | ||||| ||||| Sbjct 2047 TACAATATTCAAAAGGAGTCTACCCTCCACTTGGTCCTTCGTTTGAGGGGAGG 2099 >seq99507 Length=2862 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/233 (69%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 25170 ACAACA-TGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAA 25228 |||||| ||||| | || || || ||| | || ||||| | || || | || |||||| Sbjct 1867 ACAACAATGCAAATCTTCGTGAAGACACTGACTGGAAAGACCATTACCCTTGAGGTCGAA 1926 Query 25229 GCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCC 25288 || || |||| ||| | || || ||||| || || || || || || || || Sbjct 1927 TCCTCTGACTCTATTGAGAACGTCAAGCAAAAGATACAGGACAAGGAAGGCATCCCCCCT 1986 Query 25289 GATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGAT 25348 |||||||| | ||||| | | ||||| || ||||| |||| | | | | | ||| Sbjct 1987 GATCAGCAGCGTCTCATCTTTGCAGGCAAGCAGCTCGAGGATGGTCGCACTTTGGCCGAC 2046 Query 25349 TACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||||||| || || ||| | || || || | | ||||| ||||| Sbjct 2047 TACAATATTCAAAAGGAGTCTACCCTCCACTTGGTCCTTCGTTTGAGGGGAGG 2099 >seq99506 Length=3388 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/233 (69%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 25170 ACAACA-TGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAA 25228 |||||| ||||| | || || || ||| | || ||||| | || || | || |||||| Sbjct 569 ACAACAATGCAAATCTTCGTGAAGACACTGACTGGAAAGACCATTACCCTTGAGGTCGAA 510 Query 25229 GCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCC 25288 || || |||| ||| | || || ||||| || || || || || || || || Sbjct 509 TCCTCTGACTCTATTGAGAACGTCAAGCAAAAGATACAGGACAAGGAAGGCATCCCCCCT 450 Query 25289 GATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGAT 25348 |||||||| | ||||| | | ||||| || ||||| |||| | | | | | ||| Sbjct 449 GATCAGCAGCGTCTCATCTTTGCAGGCAAGCAGCTCGAGGATGGTCGCACTTTGGCCGAC 390 Query 25349 TACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||||||| || || ||| | || || || | | ||||| ||||| Sbjct 389 TACAATATTCAAAAGGAGTCTACCCTCCACTTGGTCCTTCGTTTGAGGGGAGG 337 >seq105692 Length=8148 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 25277 GGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGA 25336 ||||| || |||||||||||||| ||||||| | ||||| || || ||||||| | | Sbjct 3854 GGTATTCCTCCCGATCAGCAAAGGCTCATTTTTGCGGGCAAGCAGCTAGAAGATGGTCGT 3795 Query 25337 AATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGA 25396 | | ||| ||||| || |||||||| ||||| | ||| | ||| | || |||||| Sbjct 3794 ACGCTTGCCGACTACAACATCCAAAAAGAGTCCACGCTCCATCTTGTGCTCAGGTTGAGA 3735 Query 25397 GGAGGA 25402 || ||| Sbjct 3734 GGCGGA 3729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444495113772480